Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8908624 .. 8910006

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTCGTGTCACTGAGAATCCCTTCTCTGAGCTCGCTCTTCTCCCCTTCCATCTCCCGCCGTCCTCCGGCACTTCTCGACCGTCGCCACCACCACATCCGAACACCCGTATACTCCGCCTCTTTCTCCGGTCAGAGCACGGTGTACAAAACCAATGACCGAGTCGACACTCCGACTCAGAAGAGCAACCGAGTCGTGGACCGAGCCGTCTCTCCTCGGTCGCAGGACTTCAATGCTTGGTACCTCGATGTCATTGAGCAAGCCGAGCTCGCCGATTACGGTCCGGTTCGCGGCACCATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCAGGATTATCTGAATGTGAAATTCAAAGAGACTGGCCACAGTAACATGTACTTCCCACAGTTTATACCGTATTCGTTTATAGAGAAAGAAGCTAGCCATGTTGAAGGGTTTAGTCCTGAATTAGCAGTGGTGACAATAGGAGGAGGGAAGGAGCTTGAAGAAAAACTTGTGGTTCGACCCACAAGTGAAACCATAGTCAATCACATGTTCACTCAGTGGATTCATAGTTACCGTGATCTTCCCCTTATGGTTAACCAATGGGCAAATGTGACAAGATGGGAGATGCGGACAAAACCTTTTGTGAGGACACTTGAATTTCTCTGGCAGAAGGGACATACTGCTCATGCTACTCCAGAGGAGGCAGAGAAAGAGGCTATACAGATGATTGACGTGCACACAAAGTTTGCTTATGAGGAAACTGCAATACCTGTTATTGCAGGCCGAAAGTCAAAAATTGAAACATTTGCTGGTGCTGTTAGGACCTATACAATAGAAGGCTATGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

283

Amino Acids

32.33

Weight (kDa)

6.81

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	164 - 258	1.4e-09	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	240, 293
AccI	GTMKAC	2 cut(s)	111, 165
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	58, 117, 291, 625
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	359, 653
AdeI	CACNNNGTG	1 cut(s)	555
AfaI	GTAC	3 cut(s)	146, 242, 389
AfiI	CCNNNNNNNGG	3 cut(s)	67, 196, 290
AflIII	ACRYGT	2 cut(s)	384, 543
AgsI	TTSAA	6 cut(s)	232, 364, 443, 497, 653, 797
AjiI	CACGTC	1 cut(s)	730
AluBI	AGCT	4 cut(s)	33, 268, 431, 493
AluI	AGCT	4 cut(s)	33, 268, 431, 493
Alw21I	GWGCWC	4 cut(s)	35, 140, 270, 735
Alw26I	GTCTC	2 cut(s)	214, 362
Alw44I	GTGCAC	1 cut(s)	731
AoxI	GGCC	2 cut(s)	373, 778
ApaLI	GTGCAC	1 cut(s)	731
ApoI	RAATTY	2 cut(s)	359, 653
Asp700I	GAANNNNTTC	2 cut(s)	22, 336
Asp718I	GGTACC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	199, 281, 819
AsuHPI	GGTGA	1 cut(s)	481
AsuNHI	GCTAGC	1 cut(s)	431
AvaII	GGWCC	3 cut(s)	199, 281, 819
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	375
BanI	GGYRCC	2 cut(s)	240, 293
BanII	GRGCYC	2 cut(s)	35, 270
Bbv12I	GWGCWC	4 cut(s)	35, 140, 270, 735
BccI	CCATC	3 cut(s)	59, 609, 836
BceAI	ACGGC	2 cut(s)	45, 191
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcoDI	GTCTC	2 cut(s)	214, 362
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	199, 281, 819
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	199, 281, 819
BmiI	GGNNCC	2 cut(s)	242, 295
BmsI	GCATC	1 cut(s)	612
BmtI	GCTAGC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	215, 297
BsaWI	WCCGGW	2 cut(s)	128, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 196, 290
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	215, 297
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	67, 196, 290
BseMII	CTCAG	4 cut(s)	5, 20, 191, 566
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	204, 495, 710
BseSI	GKGCMC	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	2 cut(s)	82, 221
BshFI	GGCC	2 cut(s)	375, 780
BshNI	GGYRCC	2 cut(s)	240, 293
BsiEI	CGRYCG	2 cut(s)	82, 221
BsiHKAI	GWGCWC	4 cut(s)	35, 140, 270, 735
BsiSI	CCGG	3 cut(s)	68, 129, 284
BslFI	GGGAC	2 cut(s)	294, 684
BslI	CCNNNNNNNGG	3 cut(s)	67, 196, 290
BsmAI	GTCTC	2 cut(s)	214, 362
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	294, 684
BsnI	GGCC	2 cut(s)	375, 780
Bsp1286I	GDGCHC	4 cut(s)	35, 140, 270, 735
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	4 cut(s)	58, 117, 291, 625
BspANI	GGCC	2 cut(s)	375, 780
BspCNI	CTCAG	4 cut(s)	6, 21, 190, 565
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	242, 295
BspOI	GCTAGC	1 cut(s)	435
BspQI	GCTCTTC	2 cut(s)	44, 176
BspT107I	GGYRCC	2 cut(s)	240, 293
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	215, 297
BssMI	GATC	1 cut(s)	574
BssNAI	GTATAC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	112
Bst4CI	ACNGT	8 cut(s)	83, 142, 281, 317, 380, 399, 408, 572
Bst6I	CTCTTC	2 cut(s)	44, 176
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	5 cut(s)	35, 261, 270, 433, 778
BstDEI	CTNAG	4 cut(s)	14, 29, 177, 552
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	214, 362
BstMBI	GATC	1 cut(s)	574
BstMCI	CGRYCG	2 cut(s)	82, 221
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 269
BstNSI	RCATGY	2 cut(s)	388, 547
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	1 cut(s)	291
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	375, 780
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	3 cut(s)	11, 471, 560
Cac8I	GCNNGC	5 cut(s)	35, 261, 270, 433, 778
Cfr13I	GGNCC	3 cut(s)	199, 281, 819
CpoI	CGGWCCG	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	145, 241, 388
CspI	CGGWCCG	1 cut(s)	281
CviAII	CATG	5 cut(s)	298, 385, 437, 544, 683
CviQI	GTAC	3 cut(s)	145, 241, 388
DdeI	CTNAG	4 cut(s)	14, 29, 177, 552
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	44, 176
EarI	CTCTTC	2 cut(s)	44, 176
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	2 cut(s)	33, 268
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	35, 270
Eco47I	GGWCC	3 cut(s)	199, 281, 819
Eco53kI	GAGCTC	2 cut(s)	33, 268
EcoICRI	GAGCTC	2 cut(s)	33, 268
EcoO109I	RGGNCCY	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	35, 270
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	5 cut(s)	301, 388, 440, 547, 686
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	294, 684
FatI	CATG	5 cut(s)	297, 384, 436, 543, 682
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	2 cut(s)	111, 165
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	2 cut(s)	35, 270
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	375, 780
HapII	CCGG	3 cut(s)	68, 129, 284
Hin1II	CATG	5 cut(s)	301, 388, 440, 547, 686
HincII	GTYRAC	2 cut(s)	166, 592
HindII	GTYRAC	2 cut(s)	166, 592
HinfI	GANTC	5 cut(s)	18, 162, 175, 192, 559
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	3 cut(s)	68, 129, 284
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	7 cut(s)	112, 145, 166, 199, 549, 592, 733
Hpy188I	TCNGA	6 cut(s)	30, 101, 135, 174, 180, 351
Hpy188III	TCNNGA	4 cut(s)	77, 341, 455, 692
Hpy8I	GTNNAC	7 cut(s)	112, 145, 166, 199, 549, 592, 733
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	6 cut(s)	33, 57, 437, 481, 661, 827
HpyCH4III	ACNGT	8 cut(s)	83, 142, 281, 317, 380, 399, 408, 572
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	3 cut(s)	733, 761, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 269
HpyF3I	CTNAG	4 cut(s)	14, 29, 177, 552
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	301, 388, 440, 547, 686
KpnI	GGTACC	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	574
LguI	GCTCTTC	2 cut(s)	44, 176
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	6 cut(s)	9, 317, 380, 469, 566, 607
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	4 cut(s)	31, 193, 509, 569
MhlI	GDGCHC	4 cut(s)	35, 140, 270, 735
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	4 cut(s)	359, 458, 653, 792
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	3 cut(s)	169, 171, 201
MmeI	TCCRAC	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	375
MroXI	GAANNNNTTC	2 cut(s)	22, 336
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	375
MspI	CCGG	3 cut(s)	68, 129, 284
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	265, 269
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	5 cut(s)	301, 388, 440, 547, 686
NlaIV	GGNNCC	2 cut(s)	242, 295
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	3 cut(s)	9, 469, 607
NspI	RCATGY	2 cut(s)	388, 547
PciI	ACATGT	2 cut(s)	384, 543
PciSI	GCTCTTC	2 cut(s)	44, 176
PdmI	GAANNNNTTC	2 cut(s)	22, 336
PfeI	GAWTC	2 cut(s)	18, 559
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	3 cut(s)	169, 170, 200
PpsI	GAGTC	3 cut(s)	169, 170, 200
PpuMI	RGGWCCY	1 cut(s)	819
PscI	ACATGT	2 cut(s)	384, 543
Psp124BI	GAGCTC	2 cut(s)	35, 270
Psp5II	RGGWCCY	1 cut(s)	819
PspN4I	GGNNCC	2 cut(s)	242, 295
PspPI	GGNCC	3 cut(s)	199, 281, 819
PspPPI	RGGWCCY	1 cut(s)	819
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	3 cut(s)	146, 242, 389
RsaNI	GTAC	3 cut(s)	145, 241, 388
Rsr2I	CGGWCCG	1 cut(s)	281
RsrII	CGGWCCG	1 cut(s)	281
SacI	GAGCTC	2 cut(s)	35, 270
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	2 cut(s)	44, 176
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	3 cut(s)	199, 281, 819
SchI	GAGTC	3 cut(s)	169, 171, 201
SduI	GDGCHC	4 cut(s)	35, 140, 270, 735
SetI	ASST	9 cut(s)	35, 246, 270, 433, 495, 637, 732, 769, 824
SfaNI	GCATC	1 cut(s)	612
SinI	GGWCC	3 cut(s)	199, 281, 819
Sse9I	AATT	4 cut(s)	359, 458, 653, 792
SsiI	CCGC	4 cut(s)	58, 117, 291, 625
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	2 cut(s)	35, 270
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	8 cut(s)	83, 142, 281, 317, 380, 399, 408, 572
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	4 cut(s)	78, 165, 246, 514
TaqII	GACCGA	3 cut(s)	174, 207, 216
TasI	AATT	4 cut(s)	359, 458, 653, 792
TatI	WGTACW	2 cut(s)	144, 387
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	18, 559
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	18, 471, 560
TseFI	GTSAC	3 cut(s)	9, 469, 607
Tsp45I	GTSAC	3 cut(s)	9, 469, 607
TspDTI	ATGAA	1 cut(s)	551
TspRI	CASTG	3 cut(s)	18, 471, 560
Tth111I	GACNNNGTC	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	731
VpaK11BI	GGWCC	3 cut(s)	199, 281, 819
XapI	RAATTY	2 cut(s)	359, 653
XceI	RCATGY	2 cut(s)	388, 547
XmiI	GTMKAC	2 cut(s)	111, 165
XmnI	GAANNNNTTC	2 cut(s)	22, 336
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.