Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8910348 .. 8912961

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACCCATGGAGATGATACAGGTTTAATGCTTCCCCCAAAGATTGCACCGATACAGGTGGTGATCACACCAATTTGGAAGAAGGATGATGATAGAGAAGGAGTTCTGAATGCTGCATCATCCGTAAAAGAAGCATTGCAGACTGCAGACATTAGAGTTAAACTCGACTCTGATCAGAGAACCCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGAGTCCCTTTAAGAATTGAAATTGGTCCTTGTGATGTTTCAAGCCAGACTGTGGTTATATGTAGAAGAGATGTTCCTGGAAAACAAGGGAAAGTCTTCGGAATATCAATGGAGCCCTCAGTTTTGAAGGCTTATGTCAAGGACAAGTTGGATGAGATCCAGTCATCACTTATGGAAAAAGCAAAATCATTCCGAGATAGTAATATTGTGGATGTCAGCTCATATATCGCACTCAAAGTTGCAATCTCCCAGGGAAAATGGGCAAGAGGTCCTTGGTCGGCTAGTGACAAAGATGAGTTAAAAGTAAAAGAAGAAACAGGGGCAACCATTAGGTGTTTTCCTTTTGAACAGCCGGAAGGGATTAAAACATGCTTGATGACTGGTAACCGTGCGGAGGAAGTAGCTATTTTTGCAAAGTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

214

Amino Acids

23.66

Weight (kDa)

7.59

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	19 - 98	6e-16	Anticodon binding domain
ProRS-C_1	PF09180	150 - 213	6e-18	Prolyl-tRNA synthetase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	189, 268, 610
AgsI	TTSAA	5 cut(s)	199, 236, 258, 343, 563
AjnI	CCWGG	3 cut(s)	184, 292, 465
AluBI	AGCT	2 cut(s)	435, 620
AluI	AGCT	2 cut(s)	435, 620
AlwI	GGATC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	2 cut(s)	102, 311
AspS9I	GGNCC	2 cut(s)	242, 485
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	242, 485
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	186, 294, 467
BclI	TGATCA	2 cut(s)	63, 172
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	186, 294, 467
Bme18I	GGWCC	2 cut(s)	242, 485
BmgT120I	GGNCC	2 cut(s)	242, 485
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	186, 294, 467
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	304
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BsaJI	CCNNGG	5 cut(s)	7, 184, 465, 466, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 268, 610
Bse1I	ACTGG	2 cut(s)	376, 601
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	186, 294, 467
BseDI	CCNNGG	5 cut(s)	7, 184, 465, 466, 488
BseGI	GGATG	5 cut(s)	91, 119, 194, 373, 433
BseLI	CCNNNNNNNGG	3 cut(s)	189, 268, 610
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	376, 601
BseXI	GCAGC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	189, 268, 610
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	63, 172, 372
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	376, 601
BssECI	CCNNGG	5 cut(s)	7, 184, 465, 466, 488
BssMI	GATC	3 cut(s)	63, 172, 372
BssT1I	CCWWGG	2 cut(s)	7, 488
Bst2UI	CCWGG	3 cut(s)	186, 294, 467
Bst4CI	ACNGT	2 cut(s)	268, 605
Bst6I	CTCTTC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	7
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	5 cut(s)	91, 119, 194, 373, 433
BstKTI	GATC	3 cut(s)	66, 175, 375
BstMBI	GATC	3 cut(s)	63, 172, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNI	CCWGG	3 cut(s)	186, 294, 467
BstNSI	RCATGY	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	184, 292, 465
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	5 cut(s)	91, 119, 194, 373, 433
Cfr13I	GGNCC	2 cut(s)	242, 485
CviAII	CATG	2 cut(s)	8, 585
CviJI	RGCY	7 cut(s)	261, 331, 347, 435, 497, 568, 620
CviKI_1	RGCY	7 cut(s)	261, 331, 347, 435, 497, 568, 620
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	65, 174, 374
DpnII	GATC	3 cut(s)	63, 172, 372
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	7, 488
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	242, 485
Eco91I	GGTNACC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	184, 292, 465
EcoT14I	CCWWGG	2 cut(s)	7, 488
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	7, 488
FaeI	CATG	2 cut(s)	11, 588
FaiI	YATR	8 cut(s)	9, 275, 277, 351, 389, 439, 441, 586
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	7, 584
FbaI	TGATCA	2 cut(s)	63, 172
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	5 cut(s)	98, 106, 201, 380, 440
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	1 cut(s)	114
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	2 cut(s)	11, 588
HinfI	GANTC	2 cut(s)	167, 219
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	108, 172, 177, 317, 410
HpyAV	CCTTC	5 cut(s)	76, 92, 208, 337, 566
HpyCH4III	ACNGT	2 cut(s)	268, 605
HpyCH4V	TGCA	6 cut(s)	47, 116, 139, 146, 458, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	11, 588
Ksp22I	TGATCA	2 cut(s)	63, 172
Kzo9I	GATC	3 cut(s)	63, 172, 372
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	500, 599
MalI	GATC	3 cut(s)	65, 174, 374
MboI	GATC	3 cut(s)	63, 172, 372
MboII	GAAGA	4 cut(s)	91, 294, 304, 539
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	5 cut(s)	72, 194, 199, 231, 237
MlyI	GAGTC	2 cut(s)	161, 228
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	3 cut(s)	343, 476, 604
MroXI	GAANNNNTTC	2 cut(s)	102, 311
MseI	TTAA	5 cut(s)	26, 159, 227, 515, 579
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	3 cut(s)	186, 294, 467
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	186, 294, 467
MwoI	GCNNNNNNNGC	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	3 cut(s)	63, 172, 372
NlaIII	CATG	2 cut(s)	11, 588
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	588
PasI	CCCWGGG	1 cut(s)	466
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	102, 311
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	2 cut(s)	161, 227
PpsI	GAGTC	2 cut(s)	161, 227
PpuMI	RGGWCCY	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	3 cut(s)	184, 292, 465
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	184, 292, 465
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	242, 485
PspPPI	RGGWCCY	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	26, 159, 227, 515, 579
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	63, 172, 372
Sau96I	GGNCC	2 cut(s)	242, 485
SchI	GAGTC	2 cut(s)	161, 228
ScrFI	CCNGG	3 cut(s)	186, 294, 467
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	6 cut(s)	25, 60, 437, 487, 551, 622
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	242, 485
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	5 cut(s)	72, 194, 199, 231, 237
SsiI	CCGC	1 cut(s)	608
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	184, 292, 465
StyI	CCWWGG	2 cut(s)	7, 488
TaaI	ACNGT	2 cut(s)	268, 605
TaqI	TCGA	1 cut(s)	165
TasI	AATT	5 cut(s)	72, 194, 199, 231, 237
Tru1I	TTAA	5 cut(s)	26, 159, 227, 515, 579
Tru9I	TTAA	5 cut(s)	26, 159, 227, 515, 579
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	242, 485
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	588
XmnI	GAANNNNTTC	2 cut(s)	102, 311
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.