Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9394181 .. 9398118

Gene Structure 3938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCGCGAAAAATCTTGGAATATTTACATCATAAGTCAGTTACTCAAAGAACGCGCGAAATCGTTCTTCTGGGTCTCCTGCATAAACAACAATGTCGATTTTGAAGGACGAAGATCGCTCGCATCCACGGCATTAAAACCAAGATTCGGGTCGTCCCAAATTTTCCCAAACCTGGAATTATGTTCCAAGATATCACAACTTTATTATTGGACCCAAAAGCCTTCAAGGACACCATCGATTTGTTCGTTGAGAGATACAAAGGCAAAAATATTTCAGTGGTTGCAGAGTAGAATTGAGGCGCGAGGTTTTATCTTTGGTCCTCCAATTGCATTGGCAATAGGAGCAAAGTTCGTTCCCCTGAGAAAACCAAAAAAGCTGCCCGGTGACGTTATTTTTGAAGAATACACTTTGGAATATGGAAGGGACTGTCTTGAGATGCATGTTGGAGCAGTAGAACTTGGTGAGCGTGCTCTGGTGGTAGATGATTTAATAGCCACAGGAGGCACACTCTGTGCTGCAATGAATTTATTGGAACGCGTTGGAGCAGAAGTGGTCGAATGTGCATGCTTAATTGAATTACCAGATTTACAAGGACGTGAGAGGTTGAATGGAAAGCCATTGTATGTCCTAGTTGAGTACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

8.65

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	98 - 196	4.2e-14	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	6, 54, 56, 301, 537
AcsI	RAATTY	2 cut(s)	159, 523
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	146, 172
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	5 cut(s)	104, 225, 398, 575, 607
AjiI	CACGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	376, 515
ApoI	RAATTY	2 cut(s)	159, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	3 cut(s)	6, 56, 301
AspS9I	GGNCC	2 cut(s)	210, 317
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	395, 473
AvaII	GGWCC	2 cut(s)	210, 317
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	363, 502
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	629
BisI	GCNGC	2 cut(s)	377, 516
BlsI	GCNGC	2 cut(s)	378, 517
Bme1390I	CCNGG	2 cut(s)	173, 381
Bme18I	GGWCC	2 cut(s)	210, 317
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	210, 317
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	173, 381
BmsI	GCATC	2 cut(s)	131, 426
BplI	GAGNNNNNCTC	2 cut(s)	492, 524
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 172
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	146, 172
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	363, 502
Bsh1236I	CGCG	5 cut(s)	6, 54, 56, 301, 537
BshVI	ATCGAT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	139, 437
BslI	CCNNNNNNNGG	2 cut(s)	146, 172
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	139, 437
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	1 cut(s)	236
BspFNI	CGCG	5 cut(s)	6, 54, 56, 301, 537
BspLI	GGNNCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	120, 468, 565
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	5 cut(s)	6, 54, 56, 301, 537
BstHHI	GCGC	3 cut(s)	6, 56, 301
BstKTI	GATC	1 cut(s)	116
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 341
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	2 cut(s)	443, 567
BstSCI	CCNGG	2 cut(s)	171, 379
BstUI	CGCG	5 cut(s)	6, 54, 56, 301, 537
BstV1I	GCAGC	2 cut(s)	363, 502
Bsu15I	ATCGAT	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	120, 468, 565
CfoI	GCGC	3 cut(s)	6, 56, 301
Cfr13I	GGNCC	2 cut(s)	210, 317
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	2 cut(s)	440, 564
CviJI	RGCY	4 cut(s)	220, 376, 494, 616
CviKI_1	RGCY	4 cut(s)	220, 376, 494, 616
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
DraIII	CACNNNGTG	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	210, 317
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	441
FaeI	CATG	2 cut(s)	443, 567
FaiI	YATR	7 cut(s)	32, 83, 181, 417, 441, 565, 624
FaqI	GGGAC	2 cut(s)	139, 437
FatI	CATG	2 cut(s)	439, 563
Fnu4HI	GCNGC	2 cut(s)	377, 516
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	377, 516
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	3 cut(s)	5, 55, 300
GluI	GCNGC	2 cut(s)	377, 516
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	3 cut(s)	6, 56, 301
Hin1II	CATG	2 cut(s)	443, 567
Hin6I	GCGC	3 cut(s)	4, 54, 299
HinP1I	GCGC	3 cut(s)	4, 54, 299
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	395, 473
Hpy188III	TCNNGA	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	98, 231, 414
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	387, 595
HpyCH4V	TGCA	6 cut(s)	81, 283, 329, 439, 518, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 341
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	2 cut(s)	387, 595
Hsp92II	CATG	2 cut(s)	443, 567
HspAI	GCGC	3 cut(s)	4, 54, 299
Kzo9I	GATC	1 cut(s)	113
LmnI	GCTCC	3 cut(s)	341, 446, 542
LpnPI	CCDG	9 cut(s)	55, 91, 158, 185, 371, 394, 458, 483, 594
Lsp1109I	GCAGC	2 cut(s)	363, 502
LweI	GCATC	2 cut(s)	131, 426
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	2 cut(s)	387, 595
MaeIII	GTNAC	2 cut(s)	39, 383
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	3 cut(s)	58, 123, 410
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	7 cut(s)	159, 176, 291, 324, 523, 570, 575
MluI	ACGCGT	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	424, 520
MnlI	CCTC	5 cut(s)	289, 296, 330, 494, 594
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	3 cut(s)	134, 488, 569
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	173, 381
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	5 cut(s)	6, 54, 56, 301, 537
MwoI	GCNNNNNNNGC	2 cut(s)	128, 341
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	443, 567
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	2 cut(s)	443, 567
PaeI	GCATGC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	378, 517
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	210, 317
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	134, 488, 569
SatI	GCNGC	2 cut(s)	377, 516
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	2 cut(s)	210, 317
ScrFI	CCNGG	2 cut(s)	173, 381
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	6 cut(s)	174, 307, 378, 390, 598, 605
SfaNI	GCATC	2 cut(s)	131, 426
SinI	GGWCC	2 cut(s)	210, 317
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	567
Sse9I	AATT	7 cut(s)	159, 176, 291, 324, 523, 570, 575
SspI	AATATT	2 cut(s)	22, 270
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	171, 379
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	390, 598
TaqI	TCGA	3 cut(s)	96, 236, 555
TasI	AATT	7 cut(s)	159, 176, 291, 324, 523, 570, 575
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	3 cut(s)	134, 488, 569
Tru9I	TTAA	3 cut(s)	134, 488, 569
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	2 cut(s)	376, 515
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	210, 317
XapI	RAATTY	2 cut(s)	159, 523
XceI	RCATGY	2 cut(s)	443, 567
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.