Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9407969 .. 9408461

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCCTGGCGACCACCACTCTCCATCAATCATCTCATCCACCACCCCCATCATCAGCACCTCAAGATTGTCAAACACCACCATAGTCAGCTCCATGCGAATCGAAATCGATCACCGTGCCCTATGTTCTTAGTCTTCCAGTGTCTCCTCTCAAATCTTAATTTTCTACAAGATTTGGTATTTGGCCCATCTAGGTTTTCATTAATCTGCAGACTGGTTAGAGACTTTTACAAGGTTTTAAACCAAGTGAACACTGAAGAAATCCCGACTGGTCTAAAGTTTCCAGATTCATTTAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

101

Amino Acids

11.83

Weight (kDa)

9.65

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	149, 216
AoxI	GGCC	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	3 cut(s)	32, 57, 196
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	149, 216
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	109
Bse1I	ACTGG	3 cut(s)	139, 219, 274
BseBI	CCWGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	109
BseGI	GGATG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	139, 219, 274
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	149, 216
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	139, 219, 274
BssMI	GATC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	2 cut(s)	149, 216
BstMBI	GATC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	146, 252
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	109
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	2 cut(s)	91, 186
CviKI_1	RGCY	2 cut(s)	91, 186
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
DraI	TTTAAA	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	84, 96, 125
FatI	CATG	1 cut(s)	94
FokI	GGATG	1 cut(s)	23
FspBI	CTAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	100, 287
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	64, 265, 284
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	210
HpyF3I	CTNAG	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	19, 152, 200, 255, 297
MaeI	CTAG	1 cut(s)	192
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	127, 269
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	2 cut(s)	71, 158
MseI	TTAA	4 cut(s)	159, 203, 239, 294
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	100, 287
PshBI	ATTAAT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	159, 203, 239, 294
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	4 cut(s)	63, 93, 197, 237
SfcI	CTRYAG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	103, 109
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	100, 287
Tru1I	TTAA	4 cut(s)	159, 203, 239, 294
Tru9I	TTAA	4 cut(s)	159, 203, 239, 294
TscAI	CASTG	2 cut(s)	146, 259
TspDTI	ATGAA	2 cut(s)	189, 279
TspRI	CASTG	2 cut(s)	146, 259
VspI	ATTAAT	1 cut(s)	203
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.