pycom06g06580

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
10475738 .. 10477688
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1860 bp
ATGAGAAAGCTTCATACTTTTCGCCTTTCTCATGCCTTTTTGTGCTTTGTTGTTGCTTTATTTTTGGCAATAATTGATGTTACTTCAGTAACTGAGAAGGAGATTTTACTTCAATTCAAGGGGAATGTAACAAATGATCGATCATACAATCGTTTAGGCTCATGGGTTTTTACTGGGAATCCTTGCAAAGATTATGGTGGTGTGTTCTGTAACTCTGCTGGGTTTGTAGATAAGATAGTTTTGTTGAACACTAGCATTGGTGGAGTGTTGTCTCCGGCTTTGTCCGGGTTGAAATACCTGAGGGTTTTGACCTTGTTTGGGAACAGATTTTCGGGAAGTATACCAAATGAGTATGCTGAGATTCGAACATTGTATAAGATGAATTTTAGTTCAAATGCTTTATCTGGGTCGATTCCAGAGTTTATAGGTGACTTGCCTAGCATTAGGCTTCTTGACTTGTCAAGGAATGGTTTTACTGGGGAGATTCCATCGGCTTTGTTTAAGTACTGTTACAAAACCAAGTTCGTTTCTTTGTCTCATAACGCTCTTTTGGGTTCAATGCCGGAATCATTGGCGAATTGCTCGAATCTTGAAGGGTTTGATTTCTCTTTCAACAATCTCAGCGGTGGCATACCTTCGCGAATTTGCGATATTCCCAGGTTAGATTATTTGTCACTAAGAAGCAATGCGTTATCAGGGAGCGTTGTGCAGCAGCTTTCGGCTTGCCACAGCTTGAAACTACTGGATCTCAGTAGCAATTTGTTTACTGGTTCAGCACCATTTGGGGTTCTTGGATTGAGCAATCTTACTTATTTCAATGTATCGCATAATCAGTTTAACGGGAAGGTTCCTGATATTACAACTTGTAGTGAGAGAATGGAGTCTTTTGATGCTTCATGGAATGTGTTGGACGGAGAGGTTCCTCCGAGTATTACAAACTGTAGAAGTCTCAAGGTTTTGGAGTTGGGGTACAATGGGCTGAGTGGGAGCATCCCAGATGTGCTCGGGAATCTGGTTAGGCTTGTCGTGATCCAATTGTGTAATAATTCAATAAGTGGAACTATTCCAGAAAAGCTTGCAAGCATTCAGCTGCTTCAGGTCTTGGATTTGCACAATCTCAACCTTGTTGGTGAAATACCCCATGATATAAGCAATTGCATGTTTCTGCGTGAGCTGGATGTTTCTGGTAACTCGTTGGAGGGAGGAATTCCTCAAGGTCTTTACAACATGACTAACCTTGAAATCCTTGACCTCCATAAAAACCAGCTCAATGGAAGCATCCCTCCAGATGTAGGAAATCTGTCCAGCTTACAATATCTGGATCTTTCACAAAATTCACTTTCGGGGTCAATTCCTTCTTCCCTCGGAAACCTAACAAAGTTGACCTATTTTAATCTCTCCTCCAATAAACTCTCAGGCACCATTCCTGCAGCTATTCAAGGTTACGGCTCCTATGCATTTATAAATAACCCCTTCCTCTGTGGTGCTCCATTGGACACGCCTTGCTCAGCAACTGGTAATGGTACTATCACTCCCACTTTAAGAAAACCCAAGGCTCTTCGTGTGCCTGCCATCTTTGCAATTGTTGCCGCTGCAGTGATTCTTAGTGGAGTATGTTTGGTATGCATTATGAACATCAAAGCCCACAGAAAGAAGCAAGCTGATGTGACATTGGTTGTCGAGAGCACACCACTTGGCTCCACTGATTCAAATGTTATAATCGGGAAGCTGGTTCTCTTCAGCCAAAGTTTGCCCTCAAGGTATGAAGACTGGGAGTCCGGCACAAAAGCTTTGCTTGACAAAGAATGTATAATAGGTGGTGGATCGATCAATTGGTACGGTCTACAGAACAAATTTTGA

Protein Analysis

620

Amino Acids

66.89

Weight (kDa)

7.06

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 307 - 420 1.5e-10 Leucine-rich repeat region
LRR_8 PF13855 389 - 447 1.2e-07 Leucine rich repeat
LRR_8 PF13855 411 - 471 2.6e-08 Leucine rich repeat
LRR_4 PF12799 436 - 472 7.2e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1463, 1718
AccB1I GGYRCC 1 cut(s) 1418
AccI GTMKAC 2 cut(s) 340, 1843
AccII CGCG 1 cut(s) 640
AciI CCGC 2 cut(s) 624, 1590
AclWI GGATC 4 cut(s) 753, 1024, 1329, 1831
AcsI RAATTY 5 cut(s) 382, 642, 1206, 1333, 1853
AcuI CTGAAG 3 cut(s) 69, 1079, 1723
AfaI GTAC 4 cut(s) 506, 971, 1525, 1838
AfiI CCNNNNNNNGG 2 cut(s) 318, 1292
AhdI GACNNNNNGTC 1 cut(s) 1774
AjnI CCWGG 1 cut(s) 656
Alw21I GWGCWC 3 cut(s) 1005, 1489, 1688
Alw26I GTCTC 3 cut(s) 276, 540, 953
AlwI GGATC 4 cut(s) 753, 1024, 1329, 1831
AlwNI CAGNNNCTG 2 cut(s) 92, 1514
Ama87I CYCGRG 1 cut(s) 1004
ApeKI GCWGC 5 cut(s) 709, 712, 1090, 1430, 1592
ApoI RAATTY 5 cut(s) 382, 642, 1206, 1333, 1853
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 440, 1142
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 1004
AxyI CCTNAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 1418
BbsI GAAGAC 1 cut(s) 1773
Bbv12I GWGCWC 3 cut(s) 1005, 1489, 1688
BbvI GCAGC 5 cut(s) 721, 724, 1077, 1442, 1579
BccI CCATC 2 cut(s) 496, 1580
BceAI ACGGC 1 cut(s) 1462
BciT130I CCWGG 1 cut(s) 658
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 276, 540, 953
BfaI CTAG 2 cut(s) 252, 438
BfmI CTRYAG 4 cut(s) 940, 1428, 1593, 1844
BisI GCNGC 6 cut(s) 710, 713, 1091, 1431, 1590, 1593
BlpI GCTNAGC 1 cut(s) 1507
BlsI GCNGC 6 cut(s) 711, 714, 1092, 1432, 1591, 1594
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 2 cut(s) 286, 658
BmeRI GACNNNNNGTC 1 cut(s) 1774
BmeT110I CYCGRG 1 cut(s) 1004
BmiI GGNNCC 5 cut(s) 849, 921, 1420, 1450, 1699
BmrFI CCNGG 2 cut(s) 286, 658
BmrI ACTGGG 3 cut(s) 183, 486, 1780
BmsI GCATC 3 cut(s) 880, 999, 1287
BmuI ACTGGG 3 cut(s) 183, 486, 1780
BpiI GAAGAC 1 cut(s) 1773
BpmI CTGGAG 1 cut(s) 1269
Bpu1102I GCTNAGC 1 cut(s) 1507
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 3 cut(s) 935, 1197, 1741
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 2 cut(s) 139, 1826
BsaJI CCNNGG 3 cut(s) 656, 1363, 1551
BsaXI ACNNNNNCTCC 4 cut(s) 953, 983, 1516, 1546
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 1292
Bse1I ACTGG 6 cut(s) 178, 481, 747, 772, 1519, 1775
Bse21I CCTNAGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 691
BseBI CCWGG 1 cut(s) 658
BseCI ATCGAT 2 cut(s) 139, 1826
BseDI CCNNGG 3 cut(s) 656, 1363, 1551
BseGI GGATG 3 cut(s) 990, 1183, 1278
BseLI CCNNNNNNNGG 2 cut(s) 318, 1292
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 8 cut(s) 84, 290, 348, 634, 763, 971, 1428, 1521
BseNI ACTGG 6 cut(s) 178, 481, 747, 772, 1519, 1775
BseRI GAGGAG 1 cut(s) 1390
BseXI GCAGC 5 cut(s) 721, 724, 1077, 1442, 1579
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 728
Bsh1236I CGCG 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 1418
BshVI ATCGAT 2 cut(s) 139, 1826
BsiHKAI GWGCWC 3 cut(s) 1005, 1489, 1688
BsiHKCI CYCGRG 1 cut(s) 1004
BsiSI CCGG 4 cut(s) 275, 285, 563, 1779
BslI CCNNNNNNNGG 2 cut(s) 318, 1292
BsmAI GTCTC 3 cut(s) 276, 540, 953
BsmI GAATGC 1 cut(s) 1083
BsoBI CYCGRG 1 cut(s) 1004
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 1005, 1489, 1688
Bsp143I GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
Bsp1720I GCTNAGC 1 cut(s) 1507
Bsp68I TCGCGA 1 cut(s) 640
BspACI CCGC 2 cut(s) 624, 1590
BspCNI CTCAG 8 cut(s) 85, 291, 349, 633, 762, 972, 1427, 1520
BspDI ATCGAT 2 cut(s) 139, 1826
BspFNI CGCG 1 cut(s) 640
BspLI GGNNCC 5 cut(s) 849, 921, 1420, 1450, 1699
BspMAI CTGCAG 2 cut(s) 1432, 1597
BspPI GGATC 4 cut(s) 753, 1024, 1329, 1831
BspQI GCTCTTC 1 cut(s) 1563
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 1418
BsrDI GCAATG 1 cut(s) 691
BsrI ACTGG 6 cut(s) 178, 481, 747, 772, 1519, 1775
BssECI CCNNGG 3 cut(s) 656, 1363, 1551
BssMI GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
BssNAI GTATAC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 1551
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 3 cut(s) 509, 941, 1841
Bst6I CTCTTC 2 cut(s) 1563, 1742
BstAPI GCANNNNNTGC 1 cut(s) 1586
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 5 cut(s) 724, 1077, 1081, 1569, 1659
BstF5I GGATG 3 cut(s) 990, 1183, 1278
BstFNI CGCG 1 cut(s) 640
BstKTI GATC 7 cut(s) 139, 143, 748, 1032, 1324, 1826, 1830
BstMAI GTCTC 3 cut(s) 276, 540, 953
BstMBI GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
BstMWI GCNNNNNNNGC 2 cut(s) 1577, 1586
BstNI CCWGG 1 cut(s) 658
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 2 cut(s) 284, 656
BstSFI CTRYAG 4 cut(s) 940, 1428, 1593, 1844
BstUI CGCG 1 cut(s) 640
BstV1I GCAGC 5 cut(s) 721, 724, 1077, 1442, 1579
BstV2I GAAGAC 1 cut(s) 1773
BstX2I RGATCY 2 cut(s) 745, 1321
BstXI CCANNNNNNTGG 1 cut(s) 1271
BstYI RGATCY 2 cut(s) 745, 1321
BstZ17I GTATAC 1 cut(s) 341
Bsu15I ATCGAT 2 cut(s) 139, 1826
Bsu36I CCTNAGG 1 cut(s) 299
BsuTUI ATCGAT 2 cut(s) 139, 1826
BtsCI GGATG 3 cut(s) 990, 1183, 1278
BtsI GCAGTG 1 cut(s) 1602
BtsIMutI CAGTG 2 cut(s) 1602, 1701
BtuMI TCGCGA 1 cut(s) 640
Cac8I GCNNGC 5 cut(s) 724, 1077, 1081, 1569, 1659
CaiI CAGNNNCTG 2 cut(s) 92, 1514
ClaI ATCGAT 2 cut(s) 139, 1826
Csp6I GTAC 4 cut(s) 505, 970, 1524, 1837
CviAII CATG 6 cut(s) 32, 162, 897, 1142, 1159, 1228
CviQI GTAC 4 cut(s) 505, 970, 1524, 1837
DpnI GATC 7 cut(s) 138, 142, 747, 1031, 1323, 1825, 1829
DpnII GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
DriI GACNNNNNGTC 1 cut(s) 1774
Eam1104I CTCTTC 2 cut(s) 1563, 1742
Eam1105I GACNNNNNGTC 1 cut(s) 1774
EarI CTCTTC 2 cut(s) 1563, 1742
Eco130I CCWWGG 1 cut(s) 1551
Eco57I CTGAAG 3 cut(s) 69, 1079, 1723
Eco81I CCTNAGG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1206
EcoRII CCWGG 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 1551
EcoT22I ATGCAT 2 cut(s) 1459, 1628
ErhI CCWWGG 1 cut(s) 1551
FaeI CATG 6 cut(s) 35, 165, 900, 1145, 1162, 1231
FalI AAGNNNNNCTT 2 cut(s) 1779, 1811
FatI CATG 6 cut(s) 31, 161, 896, 1141, 1158, 1227
FblI GTMKAC 2 cut(s) 340, 1843
Fnu4HI GCNGC 6 cut(s) 710, 713, 1091, 1431, 1590, 1593
FokI GGATG 3 cut(s) 977, 1190, 1265
Fsp4HI GCNGC 6 cut(s) 710, 713, 1091, 1431, 1590, 1593
FspBI CTAG 2 cut(s) 252, 438
GluI GCNGC 6 cut(s) 710, 713, 1091, 1431, 1590, 1593
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 1269
HapII CCGG 4 cut(s) 275, 285, 563, 1779
Hin1II CATG 6 cut(s) 35, 165, 900, 1145, 1162, 1231
HincII GTYRAC 1 cut(s) 1383
HindII GTYRAC 1 cut(s) 1383
HindIII AAGCTT 3 cut(s) 8, 1073, 1788
HpaII CCGG 4 cut(s) 275, 285, 563, 1779
HphI GGTGA 2 cut(s) 440, 1142
Hpy166II GTNNAC 4 cut(s) 341, 765, 1383, 1844
Hpy188I TCNGA 2 cut(s) 927, 1367
Hpy8I GTNNAC 4 cut(s) 341, 765, 1383, 1844
HpyAV CCTTC 6 cut(s) 91, 587, 645, 838, 1365, 1483
HpyCH4III ACNGT 3 cut(s) 509, 941, 1841
HpyF10VI GCNNNNNNNGC 2 cut(s) 1577, 1586
Hsp92II CATG 6 cut(s) 35, 165, 900, 1145, 1162, 1231
Kzo9I GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
LguI GCTCTTC 1 cut(s) 1563
LmnI GCTCC 5 cut(s) 699, 987, 1454, 1492, 1703
Lsp1109I GCAGC 5 cut(s) 721, 724, 1077, 1442, 1579
LweI GCATC 3 cut(s) 880, 999, 1287
MaeI CTAG 2 cut(s) 252, 438
MalI GATC 7 cut(s) 138, 142, 747, 1031, 1323, 1825, 1829
MboI GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
MboII GAAGA 4 cut(s) 1350, 1550, 1729, 1778
MfeI CAATTG 4 cut(s) 1034, 1153, 1581, 1831
MflI RGATCY 2 cut(s) 745, 1321
MhlI GDGCHC 3 cut(s) 1005, 1489, 1688
MlyI GAGTC 2 cut(s) 890, 1784
MmeI TCCRAC 2 cut(s) 888, 1176
Mph1103I ATGCAT 2 cut(s) 1459, 1628
MseI TTAA 4 cut(s) 501, 837, 1392, 1541
MspA1I CMGCKG 3 cut(s) 624, 1090, 1592
MspI CCGG 4 cut(s) 275, 285, 563, 1779
MspR9I CCNGG 2 cut(s) 286, 658
MunI CAATTG 4 cut(s) 1034, 1153, 1581, 1831
Mva1269I GAATGC 1 cut(s) 1083
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 640
MwoI GCNNNNNNNGC 2 cut(s) 1577, 1586
NciI CCSGG 1 cut(s) 286
NdeII GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
NlaIII CATG 6 cut(s) 35, 165, 900, 1145, 1162, 1231
NlaIV GGNNCC 5 cut(s) 849, 921, 1420, 1450, 1699
NmuCI GTSAC 3 cut(s) 428, 672, 1666
NruI TCGCGA 1 cut(s) 640
NsiI ATGCAT 2 cut(s) 1459, 1628
NspI RCATGY 1 cut(s) 1162
NspV TTCGAA 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 1563
PctI GAATGC 1 cut(s) 1083
PfeI GAWTC 9 cut(s) 178, 361, 412, 484, 566, 586, 1009, 1600, 1706
PkrI GCNGC 6 cut(s) 711, 714, 1092, 1432, 1591, 1594
PleI GAGTC 2 cut(s) 889, 1783
PpsI GAGTC 2 cut(s) 889, 1783
PsiI TTATAA 2 cut(s) 1463, 1718
Psp6I CCWGG 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 5 cut(s) 849, 921, 1420, 1450, 1699
PstI CTGCAG 2 cut(s) 1432, 1597
PstNI CAGNNNCTG 2 cut(s) 92, 1514
PsuI RGATCY 2 cut(s) 745, 1321
PvuII CAGCTG 1 cut(s) 1090
RruI TCGCGA 1 cut(s) 640
RsaI GTAC 4 cut(s) 506, 971, 1525, 1838
RsaNI GTAC 4 cut(s) 505, 970, 1524, 1837
SapI GCTCTTC 1 cut(s) 1563
SaqAI TTAA 4 cut(s) 501, 837, 1392, 1541
SatI GCNGC 6 cut(s) 710, 713, 1091, 1431, 1590, 1593
Sau3AI GATC 7 cut(s) 136, 140, 745, 1029, 1321, 1823, 1827
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 2 cut(s) 890, 1784
ScrFI CCNGG 2 cut(s) 286, 658
SduI GDGCHC 3 cut(s) 1005, 1489, 1688
SfaNI GCATC 3 cut(s) 880, 999, 1287
SfcI CTRYAG 4 cut(s) 940, 1428, 1593, 1844
SfuI TTCGAA 1 cut(s) 364
SmlI CTYRAG 3 cut(s) 950, 1212, 1756
SmoI CTYRAG 3 cut(s) 950, 1212, 1756
SsiI CCGC 2 cut(s) 624, 1590
SspMI CTAG 2 cut(s) 252, 438
StyD4I CCNGG 2 cut(s) 284, 656
StyI CCWWGG 1 cut(s) 1551
TaaI ACNGT 3 cut(s) 509, 941, 1841
TaqI TCGA 6 cut(s) 139, 364, 410, 584, 1680, 1826
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 1592
TfiI GAWTC 9 cut(s) 178, 361, 412, 484, 566, 586, 1009, 1600, 1706
Tru1I TTAA 4 cut(s) 501, 837, 1392, 1541
Tru9I TTAA 4 cut(s) 501, 837, 1392, 1541
TscAI CASTG 2 cut(s) 1602, 1708
TseFI GTSAC 3 cut(s) 428, 672, 1666
TseI GCWGC 5 cut(s) 709, 712, 1090, 1430, 1592
Tsp45I GTSAC 3 cut(s) 428, 672, 1666
TspDTI ATGAA 4 cut(s) 395, 885, 1646, 1779
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 2 cut(s) 1602, 1708
XapI RAATTY 5 cut(s) 382, 642, 1206, 1333, 1853
XceI RCATGY 1 cut(s) 1162
XmiI GTMKAC 2 cut(s) 340, 1843
XspI CTAG 2 cut(s) 252, 438
ZrmI AGTACT 1 cut(s) 506
Zsp2I ATGCAT 2 cut(s) 1459, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.