Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10549088 .. 10549737

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGGCTGTGCAGGAGTTGATGAGTCTGTTAATCAAAGTGTTCCTGCTGGGAGATACATTGCTGCTCTCAGAAGCCCTGCACTTGACCAAGTCAAGCCAAGCTGTCTTATGGCATGCCCTGGCAACTAGCCCATGGCAGTCCTATTCTGTCTCCTTCACCTGCATCCTCAAATGCATTTACTACTTCGAAGCCGCGAAAAGAGAGCTTTTCCACGCTGTTCGGATCAAATTCTTCTTCGCCCCTTGGGTTGTCTGCGTGTTCTTAGTCCTCGGTGTACCACCTGCACTGGCCCCGGGTAAACTACACCCTGCCCTGCCTTTGCATCTTCAAAGCACCCTATTTTCTGAGGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008308 GO:0008509 GO:0009270 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010118 GO:0010119 GO:0010193 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015711 GO:0016020 GO:0016021 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030104 GO:0031224 GO:0032501 GO:0033993 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044464 GO:0046677 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050878 GO:0050891 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071944 GO:0072347 GO:0090332 GO:0097305 GO:0098656 GO:1901700 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

120

Amino Acids

13.29

Weight (kDa)

8.89

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	170, 292
Acc36I	ACCTGC	2 cut(s)	170, 292
AccII	CGCG	1 cut(s)	197
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	104, 208
AluI	AGCT	2 cut(s)	104, 208
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	296, 297
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	296, 297
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	2 cut(s)	170, 292
BisI	GCNGC	2 cut(s)	65, 195
BlsI	GCNGC	2 cut(s)	66, 196
Bme1390I	CCNGG	3 cut(s)	122, 296, 297
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	122, 296, 297
BmsI	GCATC	2 cut(s)	174, 334
Bpu14I	TTCGAA	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	296, 297
BsaJI	CCNNGG	6 cut(s)	120, 134, 245, 271, 294, 295
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	6 cut(s)	120, 134, 245, 271, 294, 295
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	84, 339
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	3 cut(s)	32, 65, 270
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	83, 340
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	170, 292
BspPI	GGATC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	6 cut(s)	120, 134, 245, 271, 294, 295
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	134, 245
Bst2UI	CCWGG	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	70, 265, 348
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	120, 294, 295
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	2 cut(s)	170, 292
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	116, 135
CviJI	RGCY	8 cut(s)	8, 77, 99, 104, 132, 194, 208, 293
CviKI_1	RGCY	8 cut(s)	8, 77, 99, 104, 132, 194, 208, 293
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	3 cut(s)	70, 265, 348
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	134, 245
Eco88I	CYCGRG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	134, 245
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	2 cut(s)	134, 245
FaeI	CATG	2 cut(s)	119, 138
FaiI	YATR	3 cut(s)	112, 117, 136
FatI	CATG	2 cut(s)	115, 134
Fnu4HI	GCNGC	2 cut(s)	65, 195
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	65, 195
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	65, 195
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	2 cut(s)	119, 138
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	278, 302
Hpy188I	TCNGA	3 cut(s)	73, 225, 349
Hpy8I	GTNNAC	2 cut(s)	278, 302
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	6 cut(s)	13, 82, 165, 177, 287, 325
HpyF3I	CTNAG	3 cut(s)	70, 265, 348
Hsp92II	CATG	2 cut(s)	119, 138
Kzo9I	GATC	1 cut(s)	225
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	174, 334
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	3 cut(s)	226, 229, 320
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	179, 281, 343
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	2 cut(s)	32, 358
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	122, 296, 297
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	197
NciI	CCSGG	2 cut(s)	296, 297
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	119, 138
NlaIV	GGNNCC	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	119
PaqCI	CACCTGC	2 cut(s)	170, 292
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	66, 196
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	32, 358
SatI	GCNGC	2 cut(s)	65, 195
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	122, 296, 297
SetI	ASST	4 cut(s)	106, 164, 210, 286
SfaNI	GCATC	2 cut(s)	174, 334
SfuI	TTCGAA	1 cut(s)	189
SmaI	CCCGGG	1 cut(s)	297
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	120, 294, 295
StyI	CCWWGG	2 cut(s)	134, 245
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	230
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	32, 358
Tru9I	TTAA	2 cut(s)	32, 358
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	119
XmaI	CCCGGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.