Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10980837 .. 10985602

Gene Structure 4766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCACCAAATTAGGCTTCAACTTAACATCTCCAACCCCTTTTAATCCCTCTATTCAGAGACCCTTTGTGTCTGTTTCTTGTCCCTCCTCCACTAGGGTTGAGTCTTTTCAGATCAGTGGCAGACAGCTATGCCTCCGCCTCCGCCGCCGCCGCCTTTTGGTACTTCCGGCCAAGGCTACTGCTGACCAACAAGGCAAGGTCGAAAACGATGACGTTGTTGACAGTAAGATTCTGCCGTATTGTAGCATAGACAACAAAGCGAAAAAGTCTTTGGGTGAACTTGAACAAGATTTTCTTCAAGCTTTACAATCATTCTACTATGACGGAAAAGCTATTATGTCAAATGAGGAATTTGATAACCTCAAGGAAGAACTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGTTCCGATGAACAGAAGTTTCTGGAAGCCTCAATGGCCTATGTGTCTGGCAAACCAATTTTGACAGATCAAGAGTACGATGAGCTGAAGCTGAGACTAAAGACAGAAGGGAGCGATATTGTTGTCGAGGGTCCAAGATGCAGTCTTCGTACTAGAAAGGTTTACAGTGACCTGTCTGTTGACTATTTGAAGATGCTCCTGCTAAATGTCCCTGCAACTGTTGTCGCGCTTGCAGCGTTCTTCTTTTTGGATCGATCTGACCGGTTTCGAAATCACATATCTTTTGGAGCTGCCGGAGCCATTCAGCTTCATTTTCACATGGGTTGCTGCTGTGCCTGTCATAGTTTATTTAGCTCAGGCACTCACAAAACTAATTATCAAGGATGTTTTGATCCTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAACTTGTCATTCTTTGGGAGCATACTTTCAGTTTCAAATGGTGGTTCTACCAACAACATCAAATGCTCAAACTGCGGAACTCCATTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.26

Weight (kDa)

8.3

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	825
AccII	CGCG	1 cut(s)	635
AciI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 910
AclWI	GGATC	2 cut(s)	666, 794
AcoI	YGGCCR	2 cut(s)	3, 171
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	4 cut(s)	165, 485, 559, 830
AfiI	CCNNNNNNNGG	3 cut(s)	96, 160, 825
AgeI	ACCGGT	1 cut(s)	669
AgsI	TTSAA	5 cut(s)	22, 287, 302, 598, 871
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 257, 289
AluBI	AGCT	8 cut(s)	130, 305, 335, 493, 499, 698, 715, 762
AluI	AGCT	8 cut(s)	130, 305, 335, 493, 499, 698, 715, 762
Alw26I	GTCTC	2 cut(s)	55, 496
AlwI	GGATC	2 cut(s)	666, 794
AoxI	GGCC	4 cut(s)	3, 171, 444, 809
ApaI	GGGCCC	1 cut(s)	813
ApeKI	GCWGC	5 cut(s)	390, 393, 641, 698, 735
ApoI	RAATTY	1 cut(s)	353
AsiGI	ACCGGT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	539, 809, 810
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	5 cut(s)	402, 405, 653, 685, 722
BceAI	ACGGC	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	55, 496
BfaI	CTAG	2 cut(s)	96, 561
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	8 cut(s)	148, 151, 154, 391, 394, 642, 699, 736
BlsI	GCNGC	8 cut(s)	149, 152, 155, 392, 395, 643, 700, 737
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	3 cut(s)	539, 809, 810
BmiI	GGNNCC	3 cut(s)	540, 706, 811
BmsI	GCATC	2 cut(s)	536, 591
BpiI	GAAGAC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	763
Bpu14I	TTCGAA	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 160, 825
Bse118I	RCCGGY	1 cut(s)	669
BseCI	ATCGAT	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	797
BseLI	CCNNNNNNNGG	3 cut(s)	96, 160, 825
BseMII	CTCAG	2 cut(s)	491, 777
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	5 cut(s)	402, 405, 653, 685, 722
Bsh1236I	CGCG	1 cut(s)	635
BshFI	GGCC	4 cut(s)	5, 173, 446, 811
BshTI	ACCGGT	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	661
BsiSI	CCGG	3 cut(s)	170, 670, 702
BslFI	GGGAC	2 cut(s)	69, 602
BslI	CCNNNNNNNGG	3 cut(s)	96, 160, 825
BsmAI	GTCTC	2 cut(s)	55, 496
BsmFI	GGGAC	2 cut(s)	69, 602
BsnI	GGCC	4 cut(s)	5, 173, 446, 811
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	676
Bsp120I	GGGCCC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp143I	GATC	5 cut(s)	114, 475, 658, 662, 799
BspACI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 910
BspANI	GGCC	4 cut(s)	5, 173, 446, 811
BspCNI	CTCAG	2 cut(s)	492, 776
BspDI	ATCGAT	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	3 cut(s)	540, 706, 811
BspPI	GGATC	2 cut(s)	666, 794
BspT104I	TTCGAA	1 cut(s)	676
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	669
BssAI	RCCGGY	1 cut(s)	669
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	114, 475, 658, 662, 799
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	227, 575, 628, 825
BstBI	TTCGAA	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	407, 500, 763
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	797
BstFNI	CGCG	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	5 cut(s)	117, 478, 661, 665, 802
BstMAI	GTCTC	2 cut(s)	55, 496
BstMBI	GATC	5 cut(s)	114, 475, 658, 662, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 153, 443, 641, 704, 907
BstSLI	GKGCMC	1 cut(s)	813
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	5 cut(s)	402, 405, 653, 685, 722
BstV2I	GAAGAC	1 cut(s)	545
Bsu15I	ATCGAT	1 cut(s)	661
BsuRI	GGCC	4 cut(s)	5, 173, 446, 811
BsuTUI	ATCGAT	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	797
BtsIMutI	CAGTG	2 cut(s)	124, 580
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	669
Cfr13I	GGNCC	3 cut(s)	539, 809, 810
ClaI	ATCGAT	1 cut(s)	661
Csp6I	GTAC	4 cut(s)	164, 484, 558, 829
CspAI	ACCGGT	1 cut(s)	669
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	379, 403, 727
CviQI	GTAC	4 cut(s)	164, 484, 558, 829
DdeI	CTNAG	3 cut(s)	407, 500, 763
DpnI	GATC	5 cut(s)	116, 477, 660, 664, 801
DpnII	GATC	5 cut(s)	114, 475, 658, 662, 799
EaeI	YGGCCR	2 cut(s)	3, 171
EciI	GGCGGA	2 cut(s)	128, 134
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	809, 810
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	382, 406, 730
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	69, 602
FatI	CATG	3 cut(s)	378, 402, 726
Fnu4HI	GCNGC	8 cut(s)	148, 151, 154, 391, 394, 642, 699, 736
FokI	GGATG	1 cut(s)	804
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	8 cut(s)	148, 151, 154, 391, 394, 642, 699, 736
FspBI	CTAG	2 cut(s)	96, 561
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	8 cut(s)	148, 151, 154, 391, 394, 642, 699, 736
HaeIII	GGCC	4 cut(s)	5, 173, 446, 811
HapII	CCGG	3 cut(s)	170, 670, 702
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	382, 406, 730
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	2 cut(s)	223, 589
HindII	GTYRAC	2 cut(s)	223, 589
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	104, 232
HpaII	CCGG	3 cut(s)	170, 670, 702
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	223, 281, 571, 589
Hpy188I	TCNGA	4 cut(s)	60, 114, 415, 667
Hpy188III	TCNNGA	2 cut(s)	431, 479
Hpy8I	GTNNAC	4 cut(s)	223, 281, 571, 589
HpyAV	CCTTC	2 cut(s)	380, 509
HpyCH4III	ACNGT	4 cut(s)	227, 575, 628, 825
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	549, 623, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 153, 443, 641, 704, 907
HpyF3I	CTNAG	3 cut(s)	407, 500, 763
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	382, 406, 730
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	5 cut(s)	114, 475, 658, 662, 799
LmnI	GCTCC	5 cut(s)	519, 609, 695, 704, 853
Lsp1109I	GCAGC	5 cut(s)	402, 405, 653, 685, 722
LweI	GCATC	2 cut(s)	536, 591
MaeI	CTAG	2 cut(s)	96, 561
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	5 cut(s)	116, 477, 660, 664, 801
MboI	GATC	5 cut(s)	114, 475, 658, 662, 799
MboII	GAAGA	5 cut(s)	290, 383, 545, 610, 640
MhlI	GDGCHC	1 cut(s)	813
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	11, 353, 465, 781
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	9 cut(s)	61, 97, 100, 146, 152, 343, 374, 448, 529
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	26, 45
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	170, 670, 702
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	6 cut(s)	147, 153, 443, 641, 704, 907
NdeII	GATC	5 cut(s)	114, 475, 658, 662, 799
NlaIII	CATG	3 cut(s)	382, 406, 730
NlaIV	GGNNCC	3 cut(s)	540, 706, 811
NmuCI	GTSAC	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	825
PinAI	ACCGGT	1 cut(s)	669
PkrI	GCNGC	8 cut(s)	149, 152, 155, 392, 395, 643, 700, 737
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	540, 706, 811
PspOMI	GGGCCC	1 cut(s)	809
PspPI	GGNCC	3 cut(s)	539, 809, 810
RsaI	GTAC	4 cut(s)	165, 485, 559, 830
RsaNI	GTAC	4 cut(s)	164, 484, 558, 829
SaqAI	TTAA	2 cut(s)	26, 45
SatI	GCNGC	8 cut(s)	148, 151, 154, 391, 394, 642, 699, 736
Sau3AI	GATC	5 cut(s)	114, 475, 658, 662, 799
Sau96I	GGNCC	3 cut(s)	539, 809, 810
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	536, 591
SfuI	TTCGAA	1 cut(s)	676
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	4 cut(s)	11, 353, 465, 781
SsiI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 910
SspMI	CTAG	2 cut(s)	96, 561
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	4 cut(s)	227, 575, 628, 825
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	204, 534, 661, 676
TasI	AATT	4 cut(s)	11, 353, 465, 781
TauI	GCSGC	3 cut(s)	150, 153, 156
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	26, 45
Tru9I	TTAA	2 cut(s)	26, 45
TscAI	CASTG	2 cut(s)	124, 580
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	390, 393, 641, 698, 735
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	432, 707
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	124, 580
Van91I	CCANNNNNTGG	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	2 cut(s)	96, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.