pycom06g06830

Histone deacetylase complex subunit SAP18-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
10986128 .. 10986993
866 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGTTATCTGTATTTCATAATGTCAAAGAGATTGCTCCAGAGGCTAGTAGAAGAAATGCTAGACTGTCTTTTGCGTTTGTATACCCTGACAAGCACAGTCGCTTTGCGGTGAAACAGTTTAAAACTTGCTGTTTTAGAAAATTCCTTACTATTTCTCATACTGATCAGATACCGATAAATTCTTTCCAGTTGGTTTTGTTGTCCCCTCGTTTTTCTTTTTATTTTGAAATTTATCTTCCATTACATTTGGAGGTAGTCTACGGGTGCGTATGCAGTATGATATTTACTCGTTTTCCAGCATTTAGCGAGGTGGGAAACGAAACAATTAAGCTTAGGTACATACACAATCGAGAAGTACTCGTGCACATACAATTGAGAACTACTTTTGCCCCTCTCCTTTTTTATTTATTTATTTTTAAAATCGTGTATTTCTTGGTTTTTAAGGTTGGGATGAGGAATTCTCATGGAAACGGGAGACAAGTGGATGAAAGCAAGGCACTGAATGATCTGAACTTTCAGGTAAACTGA

Protein Analysis

176

Amino Acids

20.6

Weight (kDa)

9.62

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 81, 258
AciI CCGC 1 cut(s) 107
AcsI RAATTY 4 cut(s) 140, 178, 228, 457
AfaI GTAC 2 cut(s) 338, 357
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 469
Alw44I GTGCAC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 362
ApoI RAATTY 4 cut(s) 140, 178, 228, 457
AsuHPI GGTGA 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 366
BauI CACGAG 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 366
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 2 cut(s) 45, 60
BmcAI AGTACT 1 cut(s) 357
BplI GAGNNNNNCTC 4 cut(s) 342, 374, 445, 477
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 456, 490
BseNI ACTGG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 163, 505
BspACI CCGC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 163, 505
BssNAI GTATAC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 359
Bst1107I GTATAC 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 359
Bst4CI ACNGT 3 cut(s) 66, 98, 117
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 456, 490
BstKTI GATC 2 cut(s) 166, 508
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 2 cut(s) 163, 505
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 366
BstZ17I GTATAC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 456, 490
BtsIMutI CAGTG 1 cut(s) 497
Csp6I GTAC 2 cut(s) 337, 356
CviAII CATG 1 cut(s) 464
CviJI RGCY 2 cut(s) 44, 331
CviKI_1 RGCY 2 cut(s) 44, 331
CviQI GTAC 2 cut(s) 337, 356
DdeI CTNAG 1 cut(s) 332
DpnI GATC 2 cut(s) 165, 507
DpnII GATC 2 cut(s) 163, 505
DraI TTTAAA 2 cut(s) 121, 418
EcoRI GAATTC 1 cut(s) 457
FaeI CATG 1 cut(s) 467
FaiI YATR 8 cut(s) 18, 82, 159, 271, 278, 341, 368, 465
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 2 cut(s) 81, 258
FokI GGATG 2 cut(s) 463, 497
FspBI CTAG 2 cut(s) 45, 60
GsuI CTGGAG 1 cut(s) 21
Hin1II CATG 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 329
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 4 cut(s) 82, 259, 364, 523
Hpy188I TCNGA 2 cut(s) 168, 510
Hpy188III TCNNGA 2 cut(s) 38, 350
Hpy8I GTNNAC 4 cut(s) 82, 259, 364, 523
HpyCH4III ACNGT 3 cut(s) 66, 98, 117
HpyCH4V TGCA 2 cut(s) 273, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 163, 505
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 51, 99, 200, 309, 503
MaeI CTAG 2 cut(s) 45, 60
MalI GATC 2 cut(s) 165, 507
MboI GATC 2 cut(s) 163, 505
MboII GAAGA 2 cut(s) 63, 227
MfeI CAATTG 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 6 cut(s) 140, 178, 228, 324, 371, 457
MnlI CCTC 6 cut(s) 34, 216, 244, 301, 402, 447
MseI TTAA 4 cut(s) 120, 327, 417, 441
MunI CAATTG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 163, 505
NlaIII CATG 1 cut(s) 467
RsaI GTAC 2 cut(s) 338, 357
RsaNI GTAC 2 cut(s) 337, 356
SaqAI TTAA 4 cut(s) 120, 327, 417, 441
Sau3AI GATC 2 cut(s) 163, 505
ScaI AGTACT 1 cut(s) 357
SduI GDGCHC 1 cut(s) 366
SetI ASST 6 cut(s) 255, 312, 333, 338, 447, 522
Sse9I AATT 6 cut(s) 140, 178, 228, 324, 371, 457
SsiI CCGC 1 cut(s) 107
SspMI CTAG 2 cut(s) 45, 60
TaaI ACNGT 3 cut(s) 66, 98, 117
TaqI TCGA 1 cut(s) 349
TasI AATT 6 cut(s) 140, 178, 228, 324, 371, 457
TatI WGTACW 1 cut(s) 355
Tru1I TTAA 4 cut(s) 120, 327, 417, 441
Tru9I TTAA 4 cut(s) 120, 327, 417, 441
TscAI CASTG 1 cut(s) 504
TspDTI ATGAA 2 cut(s) 5, 501
TspRI CASTG 1 cut(s) 504
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 4 cut(s) 140, 178, 228, 457
XmiI GTMKAC 2 cut(s) 81, 258
XspI CTAG 2 cut(s) 45, 60
ZrmI AGTACT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.