pycom06g07540

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
12303619 .. 12304161
543 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGCGAGAAACAGGGACAGTGTAAATTTGAGTAATTTGGGTGGCAATTATGTTGGGAGTAGGTACCACCCGAATGAGAAATCGAAATTTGGGAGAAATGTGATGAGATTTGGGAGTAGTGCTTCATTGGGAAAGTATGATATGAAGATCATTAAGAGGAGAGGTGTTGAAATTCCTAGTAGTACGCCCAAGCTTGGGGATATTCAACCTTTTGGTCATCCAAGTTCCATCCATGTGCTGCAAATTGTAGGTTCATTTCCTTCCTACTCCGACGACTTTGTCTAA

Protein Analysis

95

Amino Acids

10.4

Weight (kDa)

9.99

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 63
AcsI RAATTY 3 cut(s) 25, 86, 171
AfaI GTAC 2 cut(s) 65, 184
AfiI CCNNNNNNNGG 2 cut(s) 194, 195
AgsI TTSAA 2 cut(s) 170, 206
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 3 cut(s) 25, 86, 171
Asp718I GGTACC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 236
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 195
BseGI GGATG 2 cut(s) 217, 228
BseLI CCNNNNNNNGG 2 cut(s) 194, 195
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 63
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 194, 195
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 20
BstF5I GGATG 2 cut(s) 217, 228
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 225
BtsCI GGATG 2 cut(s) 217, 228
BtsIMutI CAGTG 1 cut(s) 25
Csp6I GTAC 2 cut(s) 64, 183
CviAII CATG 1 cut(s) 233
CviJI RGCY 1 cut(s) 193
CviKI_1 RGCY 1 cut(s) 193
CviQI GTAC 2 cut(s) 64, 183
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 51, 138, 143, 234
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 2 cut(s) 204, 215
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 241
Hsp92II CATG 1 cut(s) 236
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 225
MaeI CTAG 1 cut(s) 177
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 157
MluCI AATT 6 cut(s) 25, 34, 46, 86, 171, 243
MnlI CCTC 2 cut(s) 150, 155
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 72, 233
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 65
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 2 cut(s) 65, 184
RsaNI GTAC 2 cut(s) 64, 183
RseI CAYNNNNRTG 2 cut(s) 72, 233
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 1 cut(s) 147
SetI ASST 5 cut(s) 65, 166, 195, 211, 253
SgeI CNNG 8 cut(s) 18, 25, 82, 189, 202, 206, 234, 245
SmiMI CAYNNNNRTG 2 cut(s) 72, 233
Sse9I AATT 6 cut(s) 25, 34, 46, 86, 171, 243
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 83
TasI AATT 6 cut(s) 25, 34, 46, 86, 171, 243
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 114, 158, 243
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 278
XapI RAATTY 3 cut(s) 25, 86, 171
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.