pycom06g08230

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
13365270 .. 13366165
896 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
ATGGTGATCGGGATTGCTATTTTACATAAGGTAGCTAATGCGTTTATAACCAGCAGATTCTTTAAAAGTTGGGCTGCAATTGCCCTTGGCTCCAATACTACTAGTGATATAGTGCCTGTATCAGAATTTGATGCTCTAGCATCACTTTTTCTACCACTGGATTTCCTCAACTCACTGGACAAACCTTCCATACAAGTTGTCCAAGAAAGCTATATTGTTGCTCTCAAGACCAAAACTGCAAGTTCCACCGTGCCAAATCCTACCCGCATCGAAGTTGTGTCCGTTCTCATTTGGAAATCCGCAATGGAAGCATCCATCTGTAGCCACTCAAACTTGAGTTTTGTAAGGCCATCCATCTGGTGTCAAATTGTGAACATAAGGAATATATATATTGGTTCAGCCTTCGATAGAAGATGTATTGGGAAATGTTGTTGGTTATTTTGTAGTAAAGACAGAAGAAGTGATGAAGATCACGATGATATTCAAAACTTGGTTTTGGTGCAGGATTCCTTTCCACTCAGCCAAGTTTGGAGGGGAAGACCATCATGGATGGACATCCCTAGTAACCGAGAAATGAAAAACATGATGACGTTGGTGGATGTAAGTGATTACATCATCATAGAATTGTGCACGACTTTGAAAGAACAGAATATGGCCTCTTTCGAAACCAACCCGGAATTGTTTGCATATGCTTCTTGGAATACAAGTATCATCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

26.97

Weight (kDa)

5.63

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AciI CCGC 2 cut(s) 265, 300
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 2 cut(s) 485, 640
AhlI ACTAGT 1 cut(s) 101
AluBI AGCT 2 cut(s) 35, 210
AluI AGCT 2 cut(s) 35, 210
Alw21I GWGCWC 1 cut(s) 632
Alw44I GTGCAC 1 cut(s) 628
AoxI GGCC 2 cut(s) 347, 654
ApaLI GTGCAC 1 cut(s) 628
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 61
BccI CCATC 5 cut(s) 323, 358, 362, 544, 550
BcnI CCSGG 1 cut(s) 674
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 3 cut(s) 102, 137, 561
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 674
BmsI GCATC 4 cut(s) 121, 149, 276, 320
BpiI GAAGAC 1 cut(s) 544
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 209, 355
BpuMI CCSGG 1 cut(s) 674
BsaBI GATNNNNATC 2 cut(s) 468, 554
BsaJI CCNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 162, 180
Bse3DI GCAATG 1 cut(s) 309
Bse8I GATNNNNATC 2 cut(s) 468, 554
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 6 cut(s) 311, 350, 555, 555, 604, 711
BseJI GATNNNNATC 2 cut(s) 468, 554
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 532
BseNI ACTGG 2 cut(s) 162, 180
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 2 cut(s) 349, 656
BsiHKAI GWGCWC 1 cut(s) 632
BsiSI CCGG 1 cut(s) 674
BsnI GGCC 2 cut(s) 349, 656
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 6, 469
BspACI CCGC 2 cut(s) 265, 300
BspANI GGCC 2 cut(s) 349, 656
BspCNI CTCAG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 663
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 2 cut(s) 162, 180
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 6, 469
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 663
BstDEI CTNAG 1 cut(s) 518
BstF5I GGATG 6 cut(s) 311, 350, 555, 555, 604, 711
BstKTI GATC 2 cut(s) 9, 472
BstMBI GATC 2 cut(s) 6, 469
BstMWI GCNNNNNNNGC 2 cut(s) 80, 308
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 357
BsuRI GGCC 2 cut(s) 349, 656
BtsCI GGATG 6 cut(s) 311, 350, 555, 555, 604, 711
BtsIMutI CAGTG 2 cut(s) 155, 173
CviAII CATG 2 cut(s) 546, 583
CviJI RGCY 9 cut(s) 35, 74, 90, 210, 324, 349, 401, 522, 656
CviKI_1 RGCY 9 cut(s) 35, 74, 90, 210, 324, 349, 401, 522, 656
DdeI CTNAG 1 cut(s) 518
DpnI GATC 2 cut(s) 8, 471
DpnII GATC 2 cut(s) 6, 469
DraI TTTAAA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 549, 586
FatI CATG 2 cut(s) 545, 582
FauI CCCGC 1 cut(s) 272
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 6 cut(s) 298, 337, 542, 562, 611, 698
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 3 cut(s) 102, 137, 561
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 349, 656
HapII CCGG 1 cut(s) 674
Hin1II CATG 2 cut(s) 549, 586
HinfI GANTC 2 cut(s) 57, 506
HpaII CCGG 1 cut(s) 674
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 373, 630
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 10, 226, 473
Hpy8I GTNNAC 2 cut(s) 373, 630
HpyAV CCTTC 2 cut(s) 195, 412
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 5 cut(s) 77, 239, 502, 630, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 308
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 2 cut(s) 549, 586
Kzo9I GATC 2 cut(s) 6, 469
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 7 cut(s) 64, 129, 143, 161, 343, 488, 687
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 4 cut(s) 121, 149, 276, 320
MaeI CTAG 3 cut(s) 102, 137, 561
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 563
MalI GATC 2 cut(s) 8, 471
MboI GATC 2 cut(s) 6, 469
MboII GAAGA 4 cut(s) 423, 468, 479, 549
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 5 cut(s) 78, 125, 366, 623, 677
MnlI CCTC 3 cut(s) 176, 525, 667
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 674
MspR9I CCNGG 1 cut(s) 674
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 80, 308
NciI CCSGG 1 cut(s) 674
NdeI CATATG 1 cut(s) 688
NdeII GATC 2 cut(s) 6, 469
NlaIII CATG 2 cut(s) 549, 586
NlaIV GGNNCC 1 cut(s) 91
NspV TTCGAA 1 cut(s) 663
PfeI GAWTC 2 cut(s) 57, 506
PkrI GCNGC 1 cut(s) 76
PsiI TTATAA 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 6, 469
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 1 cut(s) 632
SetI ASST 5 cut(s) 33, 37, 187, 212, 593
SfaNI GCATC 4 cut(s) 121, 149, 276, 320
SfcI CTRYAG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 224, 334
SmoI CTYRAG 2 cut(s) 224, 334
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 5 cut(s) 78, 125, 366, 623, 677
SsiI CCGC 2 cut(s) 265, 300
SspMI CTAG 3 cut(s) 102, 137, 561
StyD4I CCNGG 1 cut(s) 672
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 593
TaqI TCGA 3 cut(s) 270, 405, 663
TasI AATT 5 cut(s) 78, 125, 366, 623, 677
TfiI GAWTC 2 cut(s) 57, 506
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 162, 180
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 480, 590
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 2 cut(s) 162, 180
VneI GTGCAC 1 cut(s) 628
XapI RAATTY 1 cut(s) 125
XspI CTAG 3 cut(s) 102, 137, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.