pycom06g08250

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
13381366 .. 13381728
363 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGAAAAGAGGAAAAAAGAAAAAGAAGAATAAAAAGAATAGTTGCCCAAGTTTCTCTCTTCTCCCTCTTTTTCTGTGTTTTCCAATTTACCTCGACTTGGGGCACTTTTCCAGTTTATTATCTCTGCAACGGACAAGGAAACTCCTATGTTTTTTTGGTATCAACGAGAAGGAATACAAGCCAGGCAACAACATTCTTTCCAATGCTAGTTGCACTATCAATTGCCTTGCTTTCCTTGCCAAGTTTATCAACGACAGAAGGGCTGAAGAGGTAGACGTGCCTCTTCCTTCAACATCATTCCTAACAGCATTGGAGCCACCAAGGCTGTTGGAAAATCATAGCAAACAAAGTTGCCCTTTCTGA

Protein Analysis

121

Amino Acids

13.67

Weight (kDa)

9.59

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 291
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 3 cut(s) 63, 261, 288
BstMWI GCNNNNNNNGC 2 cut(s) 236, 322
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 277
CviJI RGCY 4 cut(s) 181, 263, 316, 325
CviKI_1 RGCY 4 cut(s) 181, 263, 316, 325
Eam1104I CTCTTC 3 cut(s) 63, 261, 288
EarI CTCTTC 3 cut(s) 63, 261, 288
Eco130I CCWWGG 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaiI YATR 2 cut(s) 148, 339
FalI AAGNNNNNCTT 1 cut(s) 340
FblI GTMKAC 1 cut(s) 273
FspBI CTAG 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 3 cut(s) 163, 252, 297
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 127, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 322
HpySE526I ACGT 1 cut(s) 276
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 3 cut(s) 124, 168, 195
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 276
MboII GAAGA 4 cut(s) 37, 50, 275, 278
MfeI CAATTG 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 84, 220
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 4 cut(s) 75, 101, 262, 291
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 236, 322
NlaIV GGNNCC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 93, 273, 279
Sse9I AATT 2 cut(s) 84, 220
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 320
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 84, 220
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.