pycom06g08430

DUF185 family protein. Source PGD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
13610164 .. 13610556
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGCTCTTTTTGCTTTCCTTGCAGTGAACAGAGAGCAGCACCTGCCCAATAGCAACCCTAGCGCAAGTCCCGAGCGGCTTCCCGAAAGCTCCGCACATACCAGTCTGAAATCTATCGGCTCCGGCGCACGAAAACATCTTGTTGATTCGGAGGACGTGGAAGGGGTGAACCCTAACCATCAGGTGGAACGTATCCTTTCCGGCGAACTTGGTCATGTACTTGTTGCAGGGATTCGCGCCGCCTTGAGAGCCTCACTGGAAAATTTTCCTTCTCCCAGGAGACGAGCTAGAGTCAGATCGAGCGAGAAATCACAAAGAGAGAGGGGCAAAGCAATGGAGAAGAAGCAGAGCAAACCAATAGAGCTGTTAAACACGATGGTATCTGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

131

Amino Acids

14.26

Weight (kDa)

10.09

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 237
AciI CCGC 3 cut(s) 76, 93, 240
AcsI RAATTY 1 cut(s) 262
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 184
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 90, 287, 364
AluI AGCT 3 cut(s) 90, 287, 364
Alw26I GTCTC 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 3 cut(s) 65, 128, 239
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 71
BaeI ACNNNNGTAYC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 186, 370
BciT130I CCWGG 1 cut(s) 277
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 60, 288
BfuAI ACCTGC 1 cut(s) 51
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 3 cut(s) 38, 77, 240
BlsI GCNGC 3 cut(s) 39, 78, 241
Bme1390I CCNGG 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 102, 261
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 102, 261
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 123, 201
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 3 cut(s) 76, 93, 240
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 51
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 2 cut(s) 102, 261
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 43
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 3 cut(s) 65, 128, 239
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 43, 60, 248
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 254
BveI ACCTGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 3 cut(s) 65, 128, 239
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 215
CviJI RGCY 7 cut(s) 5, 79, 90, 120, 251, 287, 364
CviKI_1 RGCY 7 cut(s) 5, 79, 90, 120, 251, 287, 364
CviQI GTAC 1 cut(s) 218
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 218
FaiI YATR 2 cut(s) 99, 216
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 38, 77, 240
Fsp4HI GCNGC 3 cut(s) 38, 77, 240
FspBI CTAG 2 cut(s) 60, 288
GlaI GCGC 3 cut(s) 64, 127, 238
GluI GCNGC 3 cut(s) 38, 77, 240
HapII CCGG 2 cut(s) 123, 201
HhaI GCGC 3 cut(s) 65, 128, 239
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 3 cut(s) 63, 126, 237
HinP1I GCGC 3 cut(s) 63, 126, 237
HinfI GANTC 3 cut(s) 146, 232, 291
HpaII CCGG 2 cut(s) 123, 201
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 28, 169
Hpy188I TCNGA 3 cut(s) 108, 151, 296
Hpy188III TCNNGA 3 cut(s) 71, 83, 384
Hpy8I GTNNAC 2 cut(s) 28, 169
HpyAV CCTTC 2 cut(s) 155, 279
HpyCH4IV ACGT 2 cut(s) 156, 190
HpyCH4V TGCA 2 cut(s) 23, 227
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 43, 60, 248
HpySE526I ACGT 2 cut(s) 156, 190
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 3 cut(s) 63, 126, 237
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 95, 125
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 2 cut(s) 60, 288
MaeII ACGT 2 cut(s) 156, 190
MalI GATC 1 cut(s) 298
MbiI CCGCTC 1 cut(s) 76
MboI GATC 1 cut(s) 296
MboII GAAGA 1 cut(s) 352
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 3 cut(s) 145, 262, 315
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 1 cut(s) 368
MspI CCGG 2 cut(s) 123, 201
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 43, 60, 248
NdeII GATC 1 cut(s) 296
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 146, 232
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 3 cut(s) 39, 78, 241
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 3 cut(s) 38, 77, 240
Sau3AI GATC 1 cut(s) 296
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 277
SetI ASST 7 cut(s) 45, 92, 159, 186, 193, 289, 366
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 262
SsiI CCGC 3 cut(s) 76, 93, 240
SspMI CTAG 2 cut(s) 60, 288
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 2 cut(s) 159, 193
TaqI TCGA 1 cut(s) 299
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 217
TauI GCSGC 2 cut(s) 79, 242
TfiI GAWTC 2 cut(s) 146, 232
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 2 cut(s) 30, 261
TseI GCWGC 1 cut(s) 37
TspRI CASTG 2 cut(s) 30, 261
Van91I CCANNNNNTGG 1 cut(s) 184
XapI RAATTY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 2 cut(s) 60, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.