Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13818894 .. 13819797

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCCAGTTTACCCTTGGTCATGTGTGTTGCGCGTGCGTGGCTATCAGGTTTTCTAGGGAAGATACTAAAGCGTCTTTTGTTTCTCTCTTTCTTCTTCTTTTCTTCCACCTCTTCCTTCGCCGAAGGAAAGCAGGGAAGAAGGTTGGAAAAGCAGGGCTCTTTCATTTGCTTCCATAATTTTGTCCCCTTATCACAATGCAGTTCTTGCTATGATCTTCGTTTTCAGCCCTATTTTGCTTCGGGAACCTATTCTTGGAAGCGGGAGGTTGTTTGTAGAGTGAGTGAGATGGAGACCGAACCGCTACCGGATAGTAATAAAGATGAGGTGCAATCTCCATTTTTTGTTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.6

Weight (kDa)

8.91

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	262, 302
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	161
BccI	CCATC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	262, 302
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 207
BstUI	CGCG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	62
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	5, 43, 159, 229
CviKI_1	RGCY	4 cut(s)	5, 43, 159, 229
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 177, 213
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	119, 127, 135
HpyCH4V	TGCA	2 cut(s)	201, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 207
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	19, 33, 119, 140, 321
MaeI	CTAG	1 cut(s)	56
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	7 cut(s)	73, 85, 88, 96, 105, 150, 209
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	178, 350
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	121, 259, 319
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	40, 207
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	52, 113, 146, 251, 270, 330
Sse9I	AATT	2 cut(s)	178, 350
SsiI	CCGC	2 cut(s)	262, 302
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	178, 350
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	154
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.