Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14139678 .. 14140671

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTTCAAGCTCTCAACCATGCGAAGAATGGGGTGGACATTGTGTCTGGAACTAGGGTGCGGACCCATTTTGCAAGGCCTAATTGGAAGAAAGTTTTCTCAAAAACTTCCTCCAAACACTGTAATGCAAGGATAGGGGTATTCTATTGTGGAGCACCAGTTTTGGCTAAAGAACTGAGCCAGCTTTGCTATGATTTCAATCAAAAAGGTTCAACCAAATTCGAATTCCACAAGGAACACTTTAGTAAGAAATTTTTCTTGGTAGAAAAAAAGAAAAGAAAGACAATTGAAGTGCATATATATATATATATGTATGTATGTATGTATGTATGTATACAAAATAATCTCTGTTTAGTATTTAGCCATATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010119 GO:0010941 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0016999 GO:0017000 GO:0017144 GO:0023052 GO:0032870 GO:0033036 GO:0033037 GO:0033500 GO:0033554 GO:0033993 GO:0035556 GO:0042221 GO:0042592 GO:0042743 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044464 GO:0045730 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051716 GO:0052542 GO:0052545 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071396 GO:0071470 GO:0071495 GO:0071944 GO:0072593 GO:0097305 GO:0097306 GO:0104004 GO:1901700 GO:1901701 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

125

Amino Acids

14.51

Weight (kDa)

9.7

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_6	PF08030	6 - 63	7.4e-18	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	218, 224, 251
AgsI	TTSAA	4 cut(s)	8, 199, 213, 290
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 242, 274
AluBI	AGCT	2 cut(s)	11, 184
AluI	AGCT	2 cut(s)	11, 184
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	3 cut(s)	218, 224, 251
Asp700I	GAANNNNTTC	2 cut(s)	95, 254
AspS9I	GGNCC	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	63
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	158
BssNAI	GTATAC	1 cut(s)	335
Bst1107I	GTATAC	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstZ17I	GTATAC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	63
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	11, 79, 167, 180, 184, 363
CviKI_1	RGCY	6 cut(s)	11, 79, 167, 180, 184, 363
DdeI	CTNAG	1 cut(s)	176
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	23
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	37, 335
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	37, 335
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	74, 128, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	33, 171, 194
MaeI	CTAG	1 cut(s)	54
MboII	GAAGA	2 cut(s)	37, 100
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	6 cut(s)	82, 218, 224, 251, 285, 370
MnlI	CCTC	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	95, 254
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	95, 254
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	3 cut(s)	13, 186, 211
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	6 cut(s)	82, 218, 224, 251, 285, 370
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	82, 218, 224, 251, 285, 370
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TscAI	CASTG	1 cut(s)	125
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	3 cut(s)	218, 224, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	334
XmnI	GAANNNNTTC	2 cut(s)	95, 254
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.