pycom06g08910

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
14172200 .. 14173738
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1134 bp
ATGTCTAACAAAATAAATACACAATATTGCTACCATTACCAAACGCAGAACTCTTATACTTCTCAATCAATCATTGAGAAGGGACCGGTTACTGTGCTCCACCGAAGAGTTGAAGAATCCGCGGCGTATTTGCAATCTGAGGAGCTCAGACGTCAGAAAAGAAGGATGATGTACAAGTACATTGGTATTTTCCTTGTAGTTCATATCATAGTAATCACAATAATTGCACTCACTGTGATGAAGGTTAATTCCCCGAAGGTCAATGTCCAAAGCCTCAACTCTGACCCAACAACACCTTCGTTTGACACGAGCTTCACAACCCAAGTATGTGTCAAGAACACAAACTGGGGTTCTTACAAGTTTGGTCAAGCTGGAATGCGTTCCACCAAGAAGGTCAGTGTCACGGTGAGTTTGAACTCGCATGGCAGTTCCAATCTTGGCAGTGAATTGAAGAGTGGGATGTTGACGCTGAGCAGCCAAGCCAAATTGAGTGGAAAAGTTAAATTGTTTTTAATTATGAAGAAAAAGAAGAGTGCTACAATGAATTGCACCGTAACAATCGATTTGTCAACTAAGACGGTCAAAACTCTAAAATTAGGATTTTTTATTTTTCTTTTAAGGTTTGTGCTTGAAGAATTGGAAATTGGGACCTATTCCAAGGTATTGGGAAACACATCCACACCAATAACCAGTCGGTTTCATATGATTTATTATTATTTGTGCAGTTCTTTTTTTTTTTTATTTGTTCTTCTTTTAAACTTTTTTGTTTGGTTGAATATGGAGAAGGACTGCATAACCACTGCTACTTCACGTTCAAAAGAAATATTGCCTGGAGGCTGGAATTATATCAAACAGCATCTTAAGCTGGACAAATTAGACAGCAATGTCATACCCCACTGCAAACAAGACCACATAGGTATTAATTGGTCAGTTGAAGTTAGGGTTGGATTGGATGAATATAAAGGGGTGACCATCCCAAACAATGGAATTTTTGACCACTTTACTAAGTTTCTTACTAAATGTTTGAATTTTACTACATACTATTTTGGGATGAAAGTGTCAATATTTTGTTACAGAGGTTTCCAAAGCATCTGTTCAAAACCTAAAACAACAGCACTATCAATCTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

378

Amino Acids

43.02

Weight (kDa)

9.64

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AatII GACGTC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 983
AccII CGCG 1 cut(s) 122
AciI CCGC 2 cut(s) 120, 122
AcsI RAATTY 2 cut(s) 987, 1027
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 2 cut(s) 173, 179
AfiI CCNNNNNNNGG 1 cut(s) 983
AflII CTTAAG 1 cut(s) 860
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 9 cut(s) 113, 415, 451, 632, 775, 816, 935, 1027, 1098
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 6 cut(s) 280, 312, 627, 659, 927, 959
AluBI AGCT 4 cut(s) 145, 312, 371, 865
AluI AGCT 4 cut(s) 145, 312, 371, 865
Alw21I GWGCWC 2 cut(s) 99, 147
ApeKI GCWGC 1 cut(s) 474
ApoI RAATTY 2 cut(s) 987, 1027
AseI ATTAAT 1 cut(s) 921
AsiGI ACCGGT 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 83, 648
AsuHPI GGTGA 2 cut(s) 418, 979
AvaII GGWCC 2 cut(s) 83, 648
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 307
Bbv12I GWGCWC 2 cut(s) 99, 147
BbvI GCAGC 1 cut(s) 486
BccI CCATC 1 cut(s) 980
BciT130I CCWGG 1 cut(s) 831
BfrI CTTAAG 1 cut(s) 860
BisI GCNGC 2 cut(s) 123, 475
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 2 cut(s) 124, 476
Bme1390I CCNGG 1 cut(s) 831
Bme18I GGWCC 2 cut(s) 83, 648
BmgT120I GGNCC 2 cut(s) 83, 648
BmiI GGNNCC 2 cut(s) 84, 649
BmrFI CCNGG 1 cut(s) 831
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 865, 1098
BmuI ACTGGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 852
Bpu1102I GCTNAGC 1 cut(s) 470
Bsa29I ATCGAT 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 120, 657
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 983
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 350, 690
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 1 cut(s) 831
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 120, 657
BseGI GGATG 6 cut(s) 171, 465, 674, 958, 972, 1056
BseLI CCNNNNNNNGG 1 cut(s) 983
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 3 cut(s) 129, 160, 461
BseNI ACTGG 2 cut(s) 350, 690
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 486
BsgI GTGCAG 1 cut(s) 742
Bsh1236I CGCG 1 cut(s) 122
BshTI ACCGGT 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 99, 147
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 2 cut(s) 96, 661
BslI CCNNNNNNNGG 1 cut(s) 983
BsmFI GGGAC 2 cut(s) 96, 661
BsmI GAATGC 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 99, 147
Bsp1407I TGTACA 1 cut(s) 171
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 2 cut(s) 120, 122
BspCNI CTCAG 3 cut(s) 130, 159, 462
BspDI ATCGAT 1 cut(s) 561
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 84, 649
BspTI CTTAAG 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 2 cut(s) 350, 690
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 120, 657
BssNI GRCGYC 1 cut(s) 151
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 5 cut(s) 94, 235, 406, 553, 580
Bst6I CTCTTC 3 cut(s) 100, 446, 524
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 138, 146, 470, 573, 1005
BstDSI CCRYGG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 967
BstF5I GGATG 6 cut(s) 171, 465, 674, 958, 972, 1056
BstFNI CGCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 862
BstNI CCWGG 1 cut(s) 831
BstPI GGTNACC 1 cut(s) 967
BstSCI CCNGG 1 cut(s) 829
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 486
BstXI CCANNNNNNTGG 1 cut(s) 664
Bsu15I ATCGAT 1 cut(s) 561
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 6 cut(s) 171, 465, 674, 958, 972, 1056
BtsI GCAGTG 3 cut(s) 448, 798, 895
BtsIMutI CAGTG 5 cut(s) 231, 403, 448, 798, 895
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 83, 648
Cfr42I CCGCGG 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 172, 178
CspAI ACCGGT 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 472, 507
CviAII CATG 1 cut(s) 422
CviJI RGCY 8 cut(s) 145, 273, 312, 371, 477, 482, 837, 865
CviKI_1 RGCY 8 cut(s) 145, 273, 312, 371, 477, 482, 837, 865
CviQI GTAC 2 cut(s) 172, 178
DdeI CTNAG 5 cut(s) 138, 146, 470, 573, 1005
DraI TTTAAA 1 cut(s) 756
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
Eam1104I CTCTTC 3 cut(s) 100, 446, 524
EarI CTCTTC 3 cut(s) 100, 446, 524
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 83, 648
Eco53kI GAGCTC 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 967
EcoICRI GAGCTC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 648
EcoO65I GGTNACC 1 cut(s) 967
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 1 cut(s) 425
FaqI GGGAC 2 cut(s) 96, 661
FatI CATG 1 cut(s) 421
FauNDI CATATG 1 cut(s) 702
Fnu4HI GCNGC 2 cut(s) 123, 475
FokI GGATG 6 cut(s) 178, 472, 661, 959, 965, 1063
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 123, 475
GluI GCNGC 2 cut(s) 123, 475
GsuI CTGGAG 1 cut(s) 852
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 1 cut(s) 425
HincII GTYRAC 2 cut(s) 465, 570
HindII GTYRAC 2 cut(s) 465, 570
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 86
HphI GGTGA 2 cut(s) 418, 979
Hpy166II GTNNAC 2 cut(s) 465, 570
Hpy188I TCNGA 4 cut(s) 139, 149, 156, 283
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 2 cut(s) 465, 570
HpyAV CCTTC 7 cut(s) 73, 156, 235, 250, 306, 385, 778
HpyCH4III ACNGT 5 cut(s) 94, 235, 406, 553, 580
HpyCH4IV ACGT 2 cut(s) 151, 811
HpyCH4V TGCA 6 cut(s) 133, 227, 549, 723, 792, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 862
HpyF3I CTNAG 5 cut(s) 138, 146, 470, 573, 1005
HpySE526I ACGT 2 cut(s) 151, 811
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 425
KspI CCGCGG 1 cut(s) 123
LmnI GCTCC 2 cut(s) 102, 142
LpnPI CCDG 8 cut(s) 99, 331, 357, 703, 816, 823, 843, 851
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 2 cut(s) 865, 1098
MaeII ACGT 2 cut(s) 151, 811
MaeIII GTNAC 5 cut(s) 88, 400, 553, 967, 1070
MboII GAAGA 8 cut(s) 117, 125, 463, 532, 541, 644, 740, 1117
MhlI GDGCHC 2 cut(s) 99, 147
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 4 cut(s) 133, 284, 827, 1070
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 8 cut(s) 246, 501, 512, 617, 755, 861, 921, 1132
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 122
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 831
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 862
NdeI CATATG 1 cut(s) 702
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 2 cut(s) 84, 649
NmuCI GTSAC 2 cut(s) 400, 967
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PctI GAATGC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 983
PinAI ACCGGT 1 cut(s) 85
PkrI GCNGC 2 cut(s) 124, 476
PpuMI RGGWCCY 1 cut(s) 648
PshBI ATTAAT 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 829
PspEI GGTNACC 1 cut(s) 967
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 84, 649
PspPI GGNCC 2 cut(s) 83, 648
PspPPI RGGWCCY 1 cut(s) 648
RsaI GTAC 2 cut(s) 173, 179
RsaNI GTAC 2 cut(s) 172, 178
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 147
SacII CCGCGG 1 cut(s) 123
SaqAI TTAA 8 cut(s) 246, 501, 512, 617, 755, 861, 921, 1132
SatI GCNGC 2 cut(s) 123, 475
Sau96I GGNCC 2 cut(s) 83, 648
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 2 cut(s) 99, 147
SfaNI GCATC 2 cut(s) 865, 1098
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 2 cut(s) 83, 648
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
SsiI CCGC 2 cut(s) 120, 122
SspI AATATT 3 cut(s) 26, 825, 1065
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 829
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 5 cut(s) 94, 235, 406, 553, 580
TaiI ACGT 2 cut(s) 154, 814
TaqI TCGA 1 cut(s) 561
TatI WGTACW 2 cut(s) 171, 177
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 8 cut(s) 246, 501, 512, 617, 755, 861, 921, 1132
Tru9I TTAA 8 cut(s) 246, 501, 512, 617, 755, 861, 921, 1132
TscAI CASTG 5 cut(s) 238, 403, 448, 805, 902
TseFI GTSAC 2 cut(s) 400, 967
TseI GCWGC 1 cut(s) 474
Tsp45I GTSAC 2 cut(s) 400, 967
TspDTI ATGAA 8 cut(s) 191, 254, 533, 557, 689, 969, 1067, 1117
TspRI CASTG 5 cut(s) 238, 403, 448, 805, 902
Van91I CCANNNNNTGG 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 860
VpaK11BI GGWCC 2 cut(s) 83, 648
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 2 cut(s) 987, 1027
XmnI GAANNNNTTC 1 cut(s) 379
ZraI GACGTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.