pycom06g09000

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
14230293 .. 14231762
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1242 bp
ATGACAAACTCTCTCAAAAACCTCGAAGAAAACAGGCTTATTGGTCCAAACTTTCAAGATTGGCTCCGCAATCTTTGTTATGTCTTAGCTATTGAGAAGTTAGCGTTCCATATGGATGAGGACCTTCGTATTGAGAAGTTATCTAATAACTCCACTCAACAGGAAAAGCGTGTGAGGAAGACTTTGTTAGAGGCCAATGAGACAATTTATTTCTATATGCGAGCAAACATGAGTGTCGAACTTCAAAGACAGATTGGCAAAGTGAAAGCCGCCAAATGTATCATTGATCAACTTGGGAAGTTGTTAGGATATATTAAGGGTACAAATCAACAATATATTGTTAGGCTTTCTAATAAAAAACAATGTAATCTGCATTCTCTTAAGTCAATATACAAGTCTCATATTTCTCTATCTAAATTCTCTCTAGTTCATCTTTCTCAGCTACTCTTTCCTCTCCATTTTCTCTTGGATTCTCAAATATTTCAACGTATCTGGTGGTTCTCTTCTCTTTCTTTAGAAATTCCGTTAATTTCTTCGGTGCTTCCACAATGGTTCAATTCGTTATGTAACTTCTGGGTTAATTTTCTTCTAGAGTTTTCTGTTCTTGAATTGTCGGTTCTTGAATTTGGGGTCTTTTCATATTTTCATCCAAGTCCTTCACCTCCTGATACAAGGACAGAAAATGGGTGTTCCAAGAAGCCAGCGGCAATGGATCGGGTGGACGGGAGTCTGAGACCGGTCTCGGTCAGGTTAATCGTCGTTATCGACGTCATCTTGGAAGGGCTCAGGAGACGGGTCGCGACCATATCAAGAGCAGCAGTCAGCCTTTCAATTGATGCCTTCAATTACCCTACAGCTGGAACAGGGGCTTGCCCGCACTGCTGCTTGTCCTGTTCCCAACCATCGAACATCACCACTCCGATTTTTCACTCAACAAGATCAAGATCACATAATATTTGGAGTTTGGGGTATATGATTTCGTTCTTAATTCTTGGTCCAATTGACTGGAGATATGGGTATACTTACTTGGCAGAAGTGGAAATGGATGTGATTCGGATCAATGAGTCAGGTTTGAACAAGAAAGACGAGTTGTATGACATTACATTCGAAATGTTTGCTGATTCCCAAAAGAAAAGGAGACCTCAAGCAACAAGTTTTTTGGTGACTGAGACTAGAACAGGGGAATCTTGTTCAAGTGATTACTTGGCAGTTGTGATCCCGTGGACACATCTTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

414

Amino Acids

47.38

Weight (kDa)

8.81

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 771
AccI GTMKAC 1 cut(s) 1019
AccII CGCG 1 cut(s) 800
AciI CCGC 4 cut(s) 67, 270, 704, 875
AclWI GGATC 3 cut(s) 720, 1064, 1210
AcsI RAATTY 3 cut(s) 416, 519, 623
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 857
AflII CTTAAG 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 736
AluBI AGCT 3 cut(s) 89, 442, 857
AluI AGCT 3 cut(s) 89, 442, 857
Alw26I GTCTC 7 cut(s) 194, 402, 727, 745, 784, 1132, 1163
AlwI GGATC 3 cut(s) 720, 1064, 1210
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 815, 882
ApoI RAATTY 3 cut(s) 416, 519, 623
ArsI GACNNNNNNTTYG 2 cut(s) 1088, 1120
AsiGI ACCGGT 1 cut(s) 736
AspS9I GGNCC 3 cut(s) 44, 121, 995
AsuHPI GGTGA 3 cut(s) 651, 904, 1174
AsuII TTCGAA 1 cut(s) 1107
AvaII GGWCC 3 cut(s) 44, 121, 995
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 827, 869
BccI CCATC 1 cut(s) 910
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 7 cut(s) 194, 402, 727, 745, 784, 1132, 1163
BfaI CTAG 3 cut(s) 425, 590, 1173
BfmI CTRYAG 1 cut(s) 852
BfrI CTTAAG 1 cut(s) 380
BisI GCNGC 4 cut(s) 270, 705, 816, 883
BlsI GCNGC 4 cut(s) 271, 706, 817, 884
Bme18I GGWCC 3 cut(s) 44, 121, 995
BmgT120I GGNCC 3 cut(s) 44, 121, 995
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 826
BoxI GACNNNNGTC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 1027
Bpu10I CCTNAGC 1 cut(s) 785
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 1128
BsaBI GATNNNNATC 2 cut(s) 943, 1055
BsaHI GRCGYC 1 cut(s) 768
BsaI GGTCTC 3 cut(s) 727, 745, 1132
BsaJI CCNNGG 1 cut(s) 1220
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 1 cut(s) 1010
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 2 cut(s) 943, 1055
BseDI CCNNGG 1 cut(s) 1220
BseGI GGATG 3 cut(s) 121, 646, 1051
BseJI GATNNNNATC 2 cut(s) 943, 1055
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 4 cut(s) 452, 722, 799, 1158
BseNI ACTGG 1 cut(s) 1010
BseXI GCAGC 2 cut(s) 827, 869
Bsh1236I CGCG 1 cut(s) 800
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 736
BsiSI CCGG 1 cut(s) 737
BslI CCNNNNNNNGG 1 cut(s) 857
BsmAI GTCTC 7 cut(s) 194, 402, 727, 745, 784, 1132, 1163
BsmBI CGTCTC 1 cut(s) 784
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 3 cut(s) 727, 745, 1132
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 1 cut(s) 786
Bsp143I GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
Bsp68I TCGCGA 1 cut(s) 800
BspACI CCGC 4 cut(s) 67, 270, 704, 875
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 4 cut(s) 451, 723, 798, 1159
BspFNI CGCG 1 cut(s) 800
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 3 cut(s) 720, 1064, 1210
BspT104I TTCGAA 1 cut(s) 1107
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 3 cut(s) 727, 745, 1132
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 1 cut(s) 1010
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 1 cut(s) 1220
BssMI GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
BssNAI GTATAC 1 cut(s) 1020
BssNI GRCGYC 1 cut(s) 768
Bst1107I GTATAC 1 cut(s) 1020
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 768
BstAFI CTTAAG 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 1107
BstC8I GCNNGC 4 cut(s) 222, 702, 871, 875
BstDEI CTNAG 5 cut(s) 85, 438, 731, 785, 1167
BstDSI CCRYGG 1 cut(s) 1220
BstF5I GGATG 3 cut(s) 121, 646, 1051
BstFNI CGCG 1 cut(s) 800
BstKTI GATC 6 cut(s) 289, 715, 941, 947, 1059, 1218
BstMAI GTCTC 7 cut(s) 194, 402, 727, 745, 784, 1132, 1163
BstMBI GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
BstMWI GCNNNNNNNGC 1 cut(s) 879
BstPAI GACNNNNGTC 1 cut(s) 726
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 2 cut(s) 827, 869
BstV2I GAAGAC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 1005
BstZ17I GTATAC 1 cut(s) 1020
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 1220
BtsCI GGATG 3 cut(s) 121, 646, 1051
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 1 cut(s) 877
BtuMI TCGCGA 1 cut(s) 800
Cac8I GCNNGC 4 cut(s) 222, 702, 871, 875
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 44, 121, 995
Csp6I GTAC 1 cut(s) 321
CspAI ACCGGT 1 cut(s) 736
CviAII CATG 1 cut(s) 229
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 5 cut(s) 85, 438, 731, 785, 1167
DpnI GATC 6 cut(s) 288, 714, 940, 946, 1058, 1217
DpnII GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 3 cut(s) 727, 745, 1132
Eco47I GGWCC 3 cut(s) 44, 121, 995
EcoO109I RGGNCCY 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 786
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 1 cut(s) 232
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 882
FauNDI CATATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 1019
Fnu4HI GCNGC 4 cut(s) 270, 705, 816, 883
FokI GGATG 3 cut(s) 128, 633, 1058
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 4 cut(s) 270, 705, 816, 883
FspBI CTAG 3 cut(s) 425, 590, 1173
GluI GCNGC 4 cut(s) 270, 705, 816, 883
GsuI CTGGAG 1 cut(s) 1027
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 737
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 1 cut(s) 232
HinfI GANTC 6 cut(s) 470, 727, 1051, 1064, 1121, 1184
HpaII CCGG 1 cut(s) 737
HphI GGTGA 3 cut(s) 651, 904, 1174
Hpy166II GTNNAC 3 cut(s) 721, 1020, 1224
Hpy188I TCNGA 4 cut(s) 732, 921, 1056, 1241
Hpy188III TCNNGA 9 cut(s) 56, 590, 605, 620, 665, 787, 799, 810, 942
Hpy8I GTNNAC 3 cut(s) 721, 1020, 1224
Hpy99I CGWCG 2 cut(s) 761, 770
HpyAV CCTTC 4 cut(s) 134, 666, 773, 850
HpyCH4IV ACGT 2 cut(s) 487, 768
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 879
HpyF3I CTNAG 5 cut(s) 85, 438, 731, 785, 1167
HpySE526I ACGT 2 cut(s) 487, 768
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 2 cut(s) 827, 869
LweI GCATC 1 cut(s) 826
MaeI CTAG 3 cut(s) 425, 590, 1173
MaeII ACGT 2 cut(s) 487, 768
MaeIII GTNAC 2 cut(s) 566, 1162
MalI GATC 6 cut(s) 288, 714, 940, 946, 1058, 1217
MboI GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
MboII GAAGA 5 cut(s) 38, 190, 495, 525, 578
MfeI CAATTG 2 cut(s) 831, 999
MhlI GDGCHC 1 cut(s) 786
MlyI GAGTC 2 cut(s) 736, 1073
MnlI CCTC 7 cut(s) 32, 112, 168, 184, 462, 672, 1152
MseI TTAA 6 cut(s) 315, 381, 527, 579, 752, 986
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 2 cut(s) 704, 857
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 737
MunI CAATTG 2 cut(s) 831, 999
Mva1269I GAATGC 1 cut(s) 373
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 1 cut(s) 879
NdeI CATATG 1 cut(s) 111
NdeII GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 1162
NruI TCGCGA 1 cut(s) 800
NspV TTCGAA 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 762, 765
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 4 cut(s) 470, 1051, 1121, 1184
PinAI ACCGGT 1 cut(s) 736
PkrI GCNGC 4 cut(s) 271, 706, 817, 884
PleI GAGTC 2 cut(s) 735, 1072
PpsI GAGTC 2 cut(s) 735, 1072
PpuMI RGGWCCY 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 3 cut(s) 44, 121, 995
PspPPI RGGWCCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 857
RruI TCGCGA 1 cut(s) 800
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 6 cut(s) 315, 381, 527, 579, 752, 986
SatI GCNGC 4 cut(s) 270, 705, 816, 883
Sau3AI GATC 6 cut(s) 286, 712, 938, 944, 1056, 1215
Sau96I GGNCC 3 cut(s) 44, 121, 995
SchI GAGTC 2 cut(s) 736, 1073
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 1 cut(s) 826
SfcI CTRYAG 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 1107
SinI GGWCC 3 cut(s) 44, 121, 995
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 380, 1143
SmoI CTYRAG 2 cut(s) 380, 1143
SsiI CCGC 4 cut(s) 67, 270, 704, 875
SspI AATATT 2 cut(s) 480, 955
SspMI CTAG 3 cut(s) 425, 590, 1173
TaiI ACGT 2 cut(s) 490, 771
TaqI TCGA 5 cut(s) 24, 237, 765, 905, 1107
TaqII GACCGA 1 cut(s) 733
TauI GCSGC 2 cut(s) 272, 707
TfiI GAWTC 4 cut(s) 470, 1051, 1121, 1184
Tru1I TTAA 6 cut(s) 315, 381, 527, 579, 752, 986
Tru9I TTAA 6 cut(s) 315, 381, 527, 579, 752, 986
TscAI CASTG 1 cut(s) 884
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 2 cut(s) 815, 882
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 3 cut(s) 419, 627, 635
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 3 cut(s) 44, 121, 995
XapI RAATTY 3 cut(s) 416, 519, 623
XbaI TCTAGA 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 1019
XspI CTAG 3 cut(s) 425, 590, 1173
ZraI GACGTC 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.