pycom06g09170

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
14380121 .. 14380862
742 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGGAGTTGAGCGGCCTTGGCAAGATTGAAAAACTTAGGAGGCATATAGATTTTGGAGCTGATGGAGTGGTGGAGAAGATCCTGGCCCTAGCTGGATCCAACATCAAGGTCACAATCGACCTCCCCAACGAGCTCCTCTCCTCCACTGCCAAGTCTCAGTCTTTCGCTACCAACTGGGTCCAACGAAACGTCGTCGCTTACCACCCCAACACCCAGATCGAAGCTATCGGCGTCGGCAATGAGGTATTCGTTGACACCCACAACACCACCAAGTTCCATATCTGTCGGGTATTAACTGGCGGGGGGACCTCCAAAGCAGATCTGACTGTCTACCTCTTTGCTCTATTCAACGATGACAAGAAATTTGGTCCCACATCGGAGAGAAACTACGGGCTCTTCTTCCCCAACGAGCGGAGGTTCAACGGGGGAGGGGACGTGTCGAAGAGCTTGACTAGGAACACGTGGTGCATGGTAAATGGGGAGGCCAGGAAGGAGAAACTGCAGGCGGGACTAGACTACGTTTGCAGAGGAAAGAAGGGAGGCTGGGAAATTGCGATTATGAATGAAAATATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

193

Amino Acids

21.28

Weight (kDa)

8.75

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 88 6.2e-09 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 12, 412
AccI GTMKAC 1 cut(s) 330
AciI CCGC 4 cut(s) 12, 300, 412, 506
AclWI GGATC 3 cut(s) 73, 90, 103
AcsI RAATTY 1 cut(s) 362
AcvI CACGTG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 411
AflIII ACRYGT 2 cut(s) 435, 459
AgsI TTSAA 3 cut(s) 29, 349, 421
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 2 cut(s) 81, 485
AluBI AGCT 5 cut(s) 59, 92, 133, 224, 447
AluI AGCT 5 cut(s) 59, 92, 133, 224, 447
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 3 cut(s) 73, 90, 103
AoxI GGCC 3 cut(s) 13, 84, 483
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspS9I GGNCC 4 cut(s) 85, 178, 306, 368
AvaII GGWCC 3 cut(s) 178, 306, 368
BamHI GGATCC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 135, 396
BbrPI CACGTG 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 83, 487
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 3 cut(s) 89, 453, 512
BfmI CTRYAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 83, 487
Bme18I GGWCC 3 cut(s) 178, 306, 368
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 4 cut(s) 85, 178, 306, 368
BmiI GGNNCC 4 cut(s) 97, 179, 307, 370
BmrFI CCNGG 2 cut(s) 83, 487
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BsaAI YACGTR 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 179, 301
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 83, 487
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 179, 301
BseRI GAGGAG 2 cut(s) 125, 130
BseYI CCCAGC 1 cut(s) 543
BshFI GGCC 3 cut(s) 15, 86, 485
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 4 cut(s) 319, 354, 446, 522
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 4 cut(s) 319, 354, 446, 522
BsnI GGCC 3 cut(s) 15, 86, 485
Bsp1286I GDGCHC 2 cut(s) 135, 396
Bsp143I GATC 4 cut(s) 78, 95, 216, 319
BspACI CCGC 4 cut(s) 12, 300, 412, 506
BspANI GGCC 3 cut(s) 15, 86, 485
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 4 cut(s) 97, 179, 307, 370
BspMAI CTGCAG 1 cut(s) 504
BspPI GGATC 3 cut(s) 73, 90, 103
BspQI GCTCTTC 2 cut(s) 401, 437
BsrBI CCGCTC 2 cut(s) 12, 412
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 2 cut(s) 179, 301
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 78, 95, 216, 319
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 83, 487
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 401, 437
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 35, 156
BstKTI GATC 4 cut(s) 81, 98, 219, 322
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 4 cut(s) 78, 95, 216, 319
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 2 cut(s) 83, 487
BstSCI CCNGG 2 cut(s) 81, 485
BstSFI CTRYAG 1 cut(s) 500
BstX2I RGATCY 3 cut(s) 78, 95, 319
BstYI RGATCY 3 cut(s) 78, 95, 319
BsuRI GGCC 3 cut(s) 15, 86, 485
BtrI CACGTC 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 4 cut(s) 85, 178, 306, 368
CseI GACGC 1 cut(s) 220
CviAII CATG 1 cut(s) 469
DdeI CTNAG 2 cut(s) 35, 156
DpnI GATC 4 cut(s) 80, 97, 218, 321
DpnII GATC 4 cut(s) 78, 95, 216, 319
DraIII CACNNNGTG 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 401, 437
EarI CTCTTC 2 cut(s) 401, 437
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 16
Eco24I GRGCYC 2 cut(s) 135, 396
Eco47I GGWCC 3 cut(s) 178, 306, 368
Eco53kI GAGCTC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 81, 485
EcoT14I CCWWGG 1 cut(s) 16
EcoT38I GRGCYC 2 cut(s) 135, 396
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 472
FaiI YATR 6 cut(s) 45, 47, 279, 470, 560, 572
FaqI GGGAC 4 cut(s) 319, 354, 446, 522
FatI CATG 1 cut(s) 468
FauI CCCGC 2 cut(s) 293, 499
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 13
FriOI GRGCYC 2 cut(s) 135, 396
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 3 cut(s) 89, 453, 512
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 3 cut(s) 15, 86, 485
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 472
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 253, 331
Hpy188I TCNGA 2 cut(s) 324, 379
Hpy8I GTNNAC 2 cut(s) 253, 331
Hpy99I CGWCG 3 cut(s) 194, 197, 236
HpyAV CCTTC 2 cut(s) 484, 529
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 4 cut(s) 189, 435, 461, 519
HpyCH4V TGCA 3 cut(s) 468, 502, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 35, 156
HpySE526I ACGT 4 cut(s) 189, 435, 461, 519
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 472
Kzo9I GATC 4 cut(s) 78, 95, 216, 319
LguI GCTCTTC 2 cut(s) 401, 437
LmnI GCTCC 2 cut(s) 56, 138
MaeI CTAG 3 cut(s) 89, 453, 512
MaeII ACGT 4 cut(s) 189, 435, 461, 519
MaeIII GTNAC 1 cut(s) 109
MalI GATC 4 cut(s) 80, 97, 218, 321
MbiI CCGCTC 2 cut(s) 12, 412
MboI GATC 4 cut(s) 78, 95, 216, 319
MboII GAAGA 4 cut(s) 88, 388, 391, 454
MflI RGATCY 3 cut(s) 78, 95, 319
MhlI GDGCHC 2 cut(s) 135, 396
MluCI AATT 2 cut(s) 362, 549
MmeI TCCRAC 2 cut(s) 123, 205
MseI TTAA 2 cut(s) 293, 577
MspR9I CCNGG 2 cut(s) 83, 487
MvaI CCWGG 2 cut(s) 83, 487
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 4 cut(s) 78, 95, 216, 319
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 4 cut(s) 97, 179, 307, 370
NmuCI GTSAC 1 cut(s) 109
PciSI GCTCTTC 2 cut(s) 401, 437
PkrI GCNGC 1 cut(s) 14
PmaCI CACGTG 1 cut(s) 462
PmlI CACGTG 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 462
PpuMI RGGWCCY 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 81, 485
PspCI CACGTG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 543
PspGI CCWGG 2 cut(s) 81, 485
PspN4I GGNNCC 4 cut(s) 97, 179, 307, 370
PspPI GGNCC 4 cut(s) 85, 178, 306, 368
PspPPI RGGWCCY 1 cut(s) 306
PstI CTGCAG 1 cut(s) 504
PsuI RGATCY 3 cut(s) 78, 95, 319
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 2 cut(s) 401, 437
SaqAI TTAA 2 cut(s) 293, 577
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 4 cut(s) 78, 95, 216, 319
Sau96I GGNCC 4 cut(s) 85, 178, 306, 368
ScrFI CCNGG 2 cut(s) 83, 487
SduI GDGCHC 2 cut(s) 135, 396
SfcI CTRYAG 1 cut(s) 500
SinI GGWCC 3 cut(s) 178, 306, 368
Sse9I AATT 2 cut(s) 362, 549
SsiI CCGC 4 cut(s) 12, 300, 412, 506
SspMI CTAG 3 cut(s) 89, 453, 512
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 81, 485
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 4 cut(s) 192, 438, 464, 522
TaqI TCGA 3 cut(s) 117, 219, 440
TasI AATT 2 cut(s) 362, 549
TauI GCSGC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 293, 577
Tru9I TTAA 2 cut(s) 293, 577
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 575, 579
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 3 cut(s) 178, 306, 368
XapI RAATTY 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 3 cut(s) 89, 453, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.