Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14868004 .. 14871838

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACACAAATGCCCCTTTCCTCCTTCCCAATAAGTGATTTTGAGTGGTTGTTCAAAGAGATTAAATCAAAATCAATAATAAAGCAGGAGGGTCTCTCAGGTGATGGCGTCGAAACGGATCCTGAAGGAGCTGAAGGACCTCCAGAAAGATCCTCCTACTTCGTGCAGCGCTGGTATGTAAAGCGGTCATTGCGTGGCCCAGTTGCAGAAGACATGTTCCACTGGCAGGCAACAATAATGGGTCCTGCTGACAGTCCTTATGCAGGTGGAGTGTTTCTTGTCACTATCCATTTTCCTCCAGACTATCCTTTTAAGCCACCAAAGGTTGCATTCAGGACAAAGGTGTTTCACCCTAATATCAACAGCAACGGTAGCATTTGCCTTGACATATTGAAAGAACAGTGGAGCCCTGCCCTGACCATATCCAAGGTGTTGCTCTCGATCTGTTCACTGTTGACAGACCCAAACCCTGATGACCCTTTGGTCCCGGAGATTGCCCATATGTACAAGACTGACAAGAACAAGTATGAGACCACCGCAAGGAGCTGGACTCAGAAGTATGCTATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

6.08

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	67 - 183	4.7e-49	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	254
AciI	CCGC	2 cut(s)	184, 537
AclWI	GGATC	3 cut(s)	113, 126, 144
AcuI	CTGAAG	2 cut(s)	144, 153
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	506
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	226, 263, 540
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	55, 394
AluBI	AGCT	2 cut(s)	131, 546
AluI	AGCT	2 cut(s)	131, 546
Alw26I	GTCTC	2 cut(s)	98, 524
AlwI	GGATC	3 cut(s)	113, 126, 144
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	4 cut(s)	137, 197, 242, 484
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	113, 341
AvaII	GGWCC	3 cut(s)	137, 242, 484
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	98, 524
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	3 cut(s)	137, 242, 484
BmgT120I	GGNCC	4 cut(s)	137, 197, 242, 484
BmiI	GGNNCC	4 cut(s)	120, 243, 407, 486
BmrFI	CCNGG	1 cut(s)	488
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 535, 567
BpmI	CTGGAG	2 cut(s)	126, 282
BpuMI	CCSGG	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	98, 524
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 263, 540
Bse1I	ACTGG	2 cut(s)	200, 227
Bse3DI	GCAATG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	226, 263, 540
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	111, 566
BseNI	ACTGG	2 cut(s)	200, 227
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	226, 263, 540
BsmAI	GTCTC	2 cut(s)	98, 524
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	198
Bso31I	GGTCTC	2 cut(s)	98, 524
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	118, 149, 441
BspACI	CCGC	2 cut(s)	184, 537
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	110, 565
BspLI	GGNNCC	4 cut(s)	120, 243, 407, 486
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	113, 126, 144
BspTNI	GGTCTC	2 cut(s)	98, 524
BsrDI	GCAATG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	200, 227
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	118, 149, 441
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	254, 371, 402, 453
BstACI	GRCGYC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	97, 552
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	121, 152, 444
BstMAI	GTCTC	2 cut(s)	98, 524
BstMBI	GATC	3 cut(s)	118, 149, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 372
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	118, 149
BstYI	RGATCY	2 cut(s)	118, 149
BsuRI	GGCC	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	220, 407, 449
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	4 cut(s)	137, 197, 242, 484
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	5 cut(s)	131, 198, 316, 408, 546
CviKI_1	RGCY	5 cut(s)	131, 198, 316, 408, 546
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	2 cut(s)	97, 552
DpnI	GATC	3 cut(s)	120, 151, 443
DpnII	GATC	3 cut(s)	118, 149, 441
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	2 cut(s)	98, 524
Eco47I	GGWCC	3 cut(s)	137, 242, 484
Eco47III	AGCGCT	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	144, 153
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	137, 242
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	217
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	126, 282
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	113, 341
Hpy166II	GTNNAC	2 cut(s)	449, 456
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	5 cut(s)	122, 143, 299, 334, 439
Hpy8I	GTNNAC	2 cut(s)	449, 456
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	34, 119, 128
HpyCH4III	ACNGT	4 cut(s)	254, 371, 402, 453
HpyCH4V	TGCA	4 cut(s)	166, 206, 263, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 372
HpyF3I	CTNAG	2 cut(s)	97, 552
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	118, 149, 441
LmnI	GCTCC	3 cut(s)	128, 405, 543
Lsp1109I	GCAGC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	120, 151, 443
MboI	GATC	3 cut(s)	118, 149, 441
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	2 cut(s)	118, 149
MhlI	GDGCHC	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	5 cut(s)	31, 82, 150, 163, 306
MseI	TTAA	2 cut(s)	63, 312
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	190, 372
NciI	CCSGG	1 cut(s)	488
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	3 cut(s)	118, 149, 441
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	4 cut(s)	120, 243, 407, 486
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	254
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	2 cut(s)	137, 242
PscI	ACATGT	1 cut(s)	213
Psp5II	RGGWCCY	2 cut(s)	137, 242
PspN4I	GGNNCC	4 cut(s)	120, 243, 407, 486
PspPI	GGNCC	4 cut(s)	137, 197, 242, 484
PspPPI	RGGWCCY	2 cut(s)	137, 242
PsuI	RGATCY	2 cut(s)	118, 149
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	63, 312
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	118, 149, 441
Sau96I	GGNCC	4 cut(s)	137, 197, 242, 484
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	103, 133, 142, 268, 327, 345, 432, 548
SinI	GGWCC	3 cut(s)	137, 242, 484
SsiI	CCGC	2 cut(s)	184, 537
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	4 cut(s)	254, 371, 402, 453
TaqI	TCGA	2 cut(s)	111, 440
TatI	WGTACW	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	63, 312
Tru9I	TTAA	2 cut(s)	63, 312
TscAI	CASTG	3 cut(s)	227, 407, 456
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	227, 407, 456
VpaK11BI	GGWCC	3 cut(s)	137, 242, 484
XagI	CCTNNNNNAGG	1 cut(s)	261
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.