pycom06g09870

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
15191921 .. 15192463
543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGCCTACTGGTTCTCCTTTTGGCATTTCTTTACAAATAATGAATGAGTACGAGGGTTGCAAGCCTAAGTTCAAGCTTACATGCTCTCAGAAATTCATGCTGATTAAGCGTGTAGATTTCTATGGATTTGATCTCGCGTATAATGAATCCACTTCCATTCACTACTGCAAAAACCTCCGCGCGGAGGATTGCCCTTGTGAATCATATGCCGACAGGGGATGGAAGTGCTACATAAAAGGCGCTCTCTTCGGGGGCGCAGCGCAGCTCTCCCATATTGGACTGAGCTCAACACATACAATCCTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

103

Amino Acids

11.47

Weight (kDa)

8.54

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 137, 180, 182
AciI CCGC 2 cut(s) 178, 182
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 181, 184
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 3 cut(s) 76, 265, 285
AluI AGCT 3 cut(s) 76, 265, 285
Alw21I GWGCWC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 257, 262
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 4 cut(s) 182, 242, 257, 262
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 269, 274
BccI CCATC 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 2 cut(s) 258, 263
BlsI GCNGC 2 cut(s) 259, 264
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 184
Bse1I ACTGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 181, 184
BseMII CTCAG 2 cut(s) 101, 272
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 269, 274
Bsh1236I CGCG 3 cut(s) 137, 180, 182
BsiHKAI GWGCWC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 181, 184
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 2 cut(s) 178, 182
BspCNI CTCAG 2 cut(s) 100, 273
BspFNI CGCG 3 cut(s) 137, 180, 182
BsrI ACTGG 1 cut(s) 13
BssMI GATC 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 66, 87, 281
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 3 cut(s) 137, 180, 182
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 4 cut(s) 182, 242, 257, 262
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 84
BstUI CGCG 3 cut(s) 137, 180, 182
BstV1I GCAGC 2 cut(s) 269, 274
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 4 cut(s) 182, 242, 257, 262
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 81, 97
CviJI RGCY 4 cut(s) 64, 76, 265, 285
CviKI_1 RGCY 4 cut(s) 64, 76, 265, 285
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 66, 87, 281
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 2 cut(s) 84, 100
FaiI YATR 9 cut(s) 82, 98, 123, 141, 205, 207, 233, 273, 294
FatI CATG 2 cut(s) 80, 96
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 258, 263
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 258, 263
GlaI GCGC 4 cut(s) 181, 241, 256, 261
GluI GCNGC 2 cut(s) 258, 263
HaeII RGCGCY 1 cut(s) 243
HhaI GCGC 4 cut(s) 182, 242, 257, 262
Hin1II CATG 2 cut(s) 84, 100
Hin6I GCGC 4 cut(s) 180, 240, 255, 260
HinP1I GCGC 4 cut(s) 180, 240, 255, 260
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 146, 200
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 60, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 66, 87, 281
Hsp92II CATG 2 cut(s) 84, 100
HspAI GCGC 4 cut(s) 180, 240, 255, 260
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 269, 274
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 1 cut(s) 92
MnlI CCTC 3 cut(s) 46, 178, 185
MseI TTAA 1 cut(s) 105
MteI GCGCNGCGC 1 cut(s) 258
MvnI CGCG 3 cut(s) 137, 180, 182
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 205
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 84, 100
NspI RCATGY 1 cut(s) 84
PfeI GAWTC 2 cut(s) 146, 200
PkrI GCNGC 2 cut(s) 259, 264
Psp124BI GAGCTC 1 cut(s) 287
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 258, 263
Sau3AI GATC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 287
SetI ASST 4 cut(s) 78, 177, 267, 287
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 178, 182
SstI GAGCTC 1 cut(s) 287
TasI AATT 1 cut(s) 92
TfiI GAWTC 2 cut(s) 146, 200
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 2 cut(s) 257, 262
TspDTI ATGAA 3 cut(s) 56, 85, 159
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.