pycom06g10050

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
15401357 .. 15401563
207 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGCTTGCCGGCTGTTGGAAATCAATGGACAAGATGGAGGAAGAGCTCAGCGTTTGTAGAAAACCAATGAACGAGATGGGCTTGCCGTCCGAGCACAGCCTCGAAGAATTTGGAGAAGGTCTCGGCCATGGCGATCGAGATGACGATGCGAGCCTCGCGAGGGTTAGTGCATTAAAGAGAGGAGAGAAGGCGAATCTGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

69

Amino Acids

7.5

Weight (kDa)

4.88

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 15, 160
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 2 cut(s) 48, 96
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 107
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 48, 96
BccI CCATC 2 cut(s) 28, 70
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 47
BmsI GCATC 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 105, 137
Bpu1102I GCTNAGC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 160
Bse118I RCCGGY 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 15, 160
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 48, 96
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 15, 160
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 48, 96
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 47
Bsp19I CCATGG 1 cut(s) 127
Bsp68I TCGCGA 1 cut(s) 158
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 4 cut(s) 6, 10, 83, 151
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 91, 155
BstUI CGCG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 127
BtuMI TCGCGA 1 cut(s) 158
Cac8I GCNNGC 4 cut(s) 6, 10, 83, 151
Cfr10I RCCGGY 1 cut(s) 8
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 12, 46, 81, 99, 126, 153
CviKI_1 RGCY 6 cut(s) 12, 46, 81, 99, 126, 153
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 131
FaiI YATR 1 cut(s) 129
FatI CATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 137, 157
HpyAV CCTTC 2 cut(s) 110, 181
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 155
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 1 cut(s) 131
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 36
LpnPI CCDG 2 cut(s) 22, 182
LweI GCATC 1 cut(s) 136
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 53, 116
MhlI GDGCHC 2 cut(s) 48, 96
MluCI AATT 1 cut(s) 107
MnlI CCTC 5 cut(s) 31, 110, 153, 164, 173
MroNI GCCGGC 1 cut(s) 8
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 91, 155
NaeI GCCGGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 1 cut(s) 131
NmeAIII GCCGAG 1 cut(s) 102
NruI TCGCGA 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 48
PvuI CGATCG 1 cut(s) 136
RruI TCGCGA 1 cut(s) 158
SacI GAGCTC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 1 cut(s) 133
SduI GDGCHC 2 cut(s) 48, 96
SetI ASST 2 cut(s) 48, 121
SfaNI GCATC 1 cut(s) 136
Sse9I AATT 1 cut(s) 107
SstI GAGCTC 1 cut(s) 48
StyI CCWWGG 1 cut(s) 127
TaqI TCGA 2 cut(s) 102, 136
TasI AATT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 83
XapI RAATTY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.