Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16169717 .. 16172307

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAAGAAGACACGATAGTTCAATCCGAGGGGCCAGTTGGGACTATCCTTCCGTGGACAGAGCAGTTAACAGTCCGGGGAGTCGTCGCGAGCATAGTGATTGGAACGGTGTACAGTGTGATAGCCATGAAGCTAAACCTCACAACTGGGATTGTTCCTAATCTCAATGTCTCCGCTGCTCTCCTCGCCTTCGTGTTCATCCGAACGTGGACGAACCTGCTCAAGAAGGCGGGATTCAAATCAAAACCCTTCACTCGGCAGGAGAATACTATGATTCAGACTTGTGCTGTTGCTTGTTATAGTATTGCTGTGGGAGGTGGATTTGCATCTTATTTGTTGGGATTAAACAAGAAGACATATGAGCTCTCAGGTGTGAACACAGAAGGAAACTCTGCAACTGCTGTTAAGGAACCTGCGCTTGGTTGGATGACTGGCTTCCTTTTTCTAGTCTGCTTTGTTGGCCTTTTTGTCTTGATTCCTCTAAGAAAGATTATGATAGTTGACTTGAAATTGACTTATCCAAGTGGTTTGGCAACTGCGGTTCTCATCAATGGCTTCCACACTCAGGGAGATGAGATGGCTAAGAAGCAAGTACACGGATTCATGAAGTATTTTTCAGTCAGCTTCCTGTGGGGATTTTTCAAGTGGTTTTACAGTGCCACAGAAGACTGCGGATTCTCGCAGTTTCCGACATTCGGATTGCAAGCGTGGAAGAATACATTCTATTTCGATTTTAGCATGACTTTTGTGGGAGCAGGCATGATATGCTCCCATCTGGTAAACCTGTCTTTGCTTCTCGGATCCGTGCTCTCCTTCGGTGTAATGTGGCCGCTCATTGGCCGGCTTAAAGGACACTGGTTCTCGGAGAGTTTAGACGAATACGACATGAAGAGTTTATACGGTTACAAGGTTTTCCTCTCGGTTTCCCTAATCCTCGGAGACGGGATTTACAACTTCATCAAGATTCTGGCTTGCACCATTGTTAATATTCATGTCAGATTGAAGAACAAGAATCTCCCATTGGATGTCGAGGGCAAGGCGAAGCCGATTGAAGAAAAACAGAACGAAATCTTCCTCAGCGAAAACATCCCTACGTGGGTTGCAGTCGCCGGATACGTTGTCTTTTCAATCATATCGATAATCGTGATCCCGATGATGTTCCCGGAGCTTAAATGGTATTATGTTATAGTAGCCTACATGCTTGCTCCGTCTCTTGCATTCTGCAATGCTTACGGAGCTGGTCTAACCGATATAAACATGGCTTATAACTACGGAAAAGTTGCCCTCTTCGTGCTGGCAGCAATGACGGGAAAAGAGCACGGTGTGGTGGCAGGGCTTGCCGGGTGCGGTCTCATCAAATCGGTGGTTTCCGTGGCATGTATTCTGATGCAAGATCGATCAAGACAGCCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0010035 GO:0010038 GO:0010039 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

472

Amino Acids

51.92

Weight (kDa)

8.68

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	22 - 465	2.7e-102	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1266
Acc36I	ACCTGC	2 cut(s)	225, 421
AccBSI	CCGCTC	1 cut(s)	832
AccII	CGCG	1 cut(s)	89
AciI	CCGC	6 cut(s)	174, 230, 539, 672, 830, 1347
AclWI	GGATC	3 cut(s)	795, 808, 1141
AcoI	YGGCCR	2 cut(s)	827, 838
AdeI	CACNNNGTG	1 cut(s)	1324
AfaI	GTAC	2 cut(s)	113, 594
AfiI	CCNNNNNNNGG	6 cut(s)	255, 419, 565, 695, 836, 1096
AgsI	TTSAA	7 cut(s)	23, 238, 508, 643, 1003, 1052, 1128
AjuI	GAANNNNNNNTTGG	4 cut(s)	402, 434, 1004, 1036
AluBI	AGCT	5 cut(s)	133, 364, 624, 1168, 1238
AluI	AGCT	5 cut(s)	133, 364, 624, 1168, 1238
Alw21I	GWGCWC	3 cut(s)	366, 810, 1320
Alw26I	GTCTC	4 cut(s)	175, 933, 1215, 1355
AlwI	GGATC	3 cut(s)	795, 808, 1141
AoxI	GGCC	4 cut(s)	32, 460, 827, 838
ApeKI	GCWGC	2 cut(s)	176, 1298
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	3 cut(s)	77, 1163, 1342
BamHI	GGATCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BbsI	GAAGAC	3 cut(s)	15, 359, 672
Bbv12I	GWGCWC	3 cut(s)	366, 810, 1320
BbvCI	CCTCAGC	1 cut(s)	1076
BbvI	GCAGC	2 cut(s)	163, 1310
BccI	CCATC	2 cut(s)	571, 780
BciVI	GTATCC	1 cut(s)	1106
BcnI	CCSGG	3 cut(s)	77, 1163, 1342
BcoDI	GTCTC	4 cut(s)	175, 933, 1215, 1355
BfaI	CTAG	1 cut(s)	446
BfuAI	ACCTGC	2 cut(s)	225, 421
BfuI	GTATCC	1 cut(s)	1106
BisI	GCNGC	3 cut(s)	177, 830, 1299
BlsI	GCNGC	3 cut(s)	178, 831, 1300
Bme1390I	CCNGG	3 cut(s)	77, 1163, 1342
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	33, 411, 802
BmrFI	CCNGG	3 cut(s)	77, 1163, 1342
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	335, 1377
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	3 cut(s)	15, 359, 672
Bpu10I	CCTNAGC	1 cut(s)	1076
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	77, 1163, 1342
Bsa29I	ATCGAT	2 cut(s)	1136, 1396
BsaAI	YACGTR	1 cut(s)	1095
BsaBI	GATNNNNATC	2 cut(s)	238, 325
BsaI	GGTCTC	1 cut(s)	1355
BsaJI	CCNNGG	5 cut(s)	27, 53, 76, 934, 1371
Bsc4I	CCNNNNNNNGG	6 cut(s)	255, 419, 565, 695, 836, 1096
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	4 cut(s)	35, 151, 436, 860
Bse3DI	GCAATG	2 cut(s)	1231, 1308
Bse8I	GATNNNNATC	2 cut(s)	238, 325
BseCI	ATCGAT	2 cut(s)	1136, 1396
BseDI	CCNNGG	5 cut(s)	27, 53, 76, 934, 1371
BseGI	GGATG	4 cut(s)	198, 432, 1030, 1086
BseJI	GATNNNNATC	2 cut(s)	238, 325
BseLI	CCNNNNNNNGG	6 cut(s)	255, 419, 565, 695, 836, 1096
BseMI	GCAATG	2 cut(s)	1231, 1308
BseMII	CTCAG	3 cut(s)	381, 578, 1090
BseNI	ACTGG	4 cut(s)	35, 151, 436, 860
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	163, 1310
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	34, 462, 829, 840
BshVI	ATCGAT	2 cut(s)	1136, 1396
BsiHKAI	GWGCWC	3 cut(s)	366, 810, 1320
BsiSI	CCGG	5 cut(s)	76, 841, 1110, 1163, 1341
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	6 cut(s)	255, 419, 565, 695, 836, 1096
BsmAI	GTCTC	4 cut(s)	175, 933, 1215, 1355
BsmBI	CGTCTC	2 cut(s)	933, 1215
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	1217
BsnI	GGCC	4 cut(s)	34, 462, 829, 840
Bso31I	GGTCTC	1 cut(s)	1355
Bsp1286I	GDGCHC	3 cut(s)	366, 810, 1320
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	800, 1146, 1393, 1397
Bsp68I	TCGCGA	1 cut(s)	89
BspACI	CCGC	6 cut(s)	174, 230, 539, 672, 830, 1347
BspANI	GGCC	4 cut(s)	34, 462, 829, 840
BspCNI	CTCAG	3 cut(s)	380, 577, 1089
BspDI	ATCGAT	2 cut(s)	1136, 1396
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	3 cut(s)	33, 411, 802
BspMI	ACCTGC	2 cut(s)	225, 421
BspPI	GGATC	3 cut(s)	795, 808, 1141
BspTNI	GGTCTC	1 cut(s)	1355
BsrBI	CCGCTC	1 cut(s)	832
BsrDI	GCAATG	2 cut(s)	1231, 1308
BsrFI	RCCGGY	1 cut(s)	840
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	4 cut(s)	35, 151, 436, 860
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	5 cut(s)	27, 53, 76, 934, 1371
BssMI	GATC	4 cut(s)	800, 1146, 1393, 1397
Bst4CI	ACNGT	6 cut(s)	73, 109, 116, 656, 902, 1322
Bst6I	CTCTTC	2 cut(s)	884, 1292
BstAPI	GCANNNNNTGC	2 cut(s)	765, 1337
BstAUI	TGTACA	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	1095
BstC8I	GCNNGC	8 cut(s)	91, 705, 757, 842, 973, 1203, 1296, 1338
BstDEI	CTNAG	5 cut(s)	367, 482, 564, 582, 1076
BstDSI	CCRYGG	2 cut(s)	53, 1371
BstF5I	GGATG	4 cut(s)	198, 432, 1030, 1086
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	4 cut(s)	803, 1149, 1396, 1400
BstMAI	GTCTC	4 cut(s)	175, 933, 1215, 1355
BstMBI	GATC	4 cut(s)	800, 1146, 1393, 1397
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 459, 765, 1235, 1337
BstNSI	RCATGY	2 cut(s)	1201, 1380
BstSCI	CCNGG	3 cut(s)	75, 1161, 1340
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	163, 1310
BstV2I	GAAGAC	3 cut(s)	15, 359, 672
BstX2I	RGATCY	1 cut(s)	800
BstYI	RGATCY	1 cut(s)	800
Bsu15I	ATCGAT	2 cut(s)	1136, 1396
BsuI	GTATCC	1 cut(s)	1106
BsuRI	GGCC	4 cut(s)	34, 462, 829, 840
BsuTUI	ATCGAT	2 cut(s)	1136, 1396
BtgI	CCRYGG	2 cut(s)	53, 1371
BtsCI	GGATG	4 cut(s)	198, 432, 1030, 1086
BtsIMutI	CAGTG	3 cut(s)	121, 661, 853
BtuMI	TCGCGA	1 cut(s)	89
BveI	ACCTGC	2 cut(s)	225, 421
Cac8I	GCNNGC	8 cut(s)	91, 705, 757, 842, 973, 1203, 1296, 1338
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	2 cut(s)	1136, 1396
Csp6I	GTAC	2 cut(s)	112, 593
CviAII	CATG	9 cut(s)	127, 604, 739, 760, 886, 992, 1198, 1258, 1377
CviQI	GTAC	2 cut(s)	112, 593
DdeI	CTNAG	5 cut(s)	367, 482, 564, 582, 1076
DpnI	GATC	4 cut(s)	802, 1148, 1395, 1399
DpnII	GATC	4 cut(s)	800, 1146, 1393, 1397
DraIII	CACNNNGTG	1 cut(s)	1324
EaeI	YGGCCR	2 cut(s)	827, 838
Eam1104I	CTCTTC	2 cut(s)	884, 1292
EarI	CTCTTC	2 cut(s)	884, 1292
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	1355
Eco53kI	GAGCTC	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	366
Esp3I	CGTCTC	2 cut(s)	933, 1215
FaeI	CATG	9 cut(s)	130, 607, 742, 763, 889, 995, 1201, 1261, 1380
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	9 cut(s)	126, 603, 738, 759, 885, 991, 1197, 1257, 1376
FauI	CCCGC	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	177, 830, 1299
FokI	GGATG	4 cut(s)	185, 439, 1037, 1073
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	177, 830, 1299
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	3 cut(s)	177, 830, 1299
HaeIII	GGCC	4 cut(s)	34, 462, 829, 840
HapII	CCGG	5 cut(s)	76, 841, 1110, 1163, 1341
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	9 cut(s)	130, 607, 742, 763, 889, 995, 1201, 1261, 1380
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	2 cut(s)	69, 502
HindII	GTYRAC	2 cut(s)	69, 502
HinfI	GANTC	8 cut(s)	81, 234, 274, 475, 600, 675, 964, 1012
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	5 cut(s)	76, 841, 1110, 1163, 1341
Hpy166II	GTNNAC	8 cut(s)	57, 69, 112, 210, 376, 502, 595, 781
Hpy188III	TCNNGA	8 cut(s)	88, 223, 472, 604, 961, 1144, 1150, 1401
Hpy8I	GTNNAC	8 cut(s)	57, 69, 112, 210, 376, 502, 595, 781
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	6 cut(s)	59, 199, 220, 259, 377, 823
HpyCH4III	ACNGT	6 cut(s)	73, 109, 116, 656, 902, 1322
HpyCH4IV	ACGT	3 cut(s)	206, 1094, 1116
HpyCH4V	TGCA	8 cut(s)	326, 395, 703, 975, 1103, 1217, 1224, 1390
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 459, 765, 1235, 1337
HpyF3I	CTNAG	5 cut(s)	367, 482, 564, 582, 1076
HpySE526I	ACGT	3 cut(s)	206, 1094, 1116
Hsp92II	CATG	9 cut(s)	130, 607, 742, 763, 889, 995, 1201, 1261, 1380
HspAI	GCGC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	840
KroNI	GCCGGC	1 cut(s)	842
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	800, 1146, 1393, 1397
LmnI	GCTCC	5 cut(s)	752, 773, 1165, 1210, 1235
Lsp1109I	GCAGC	2 cut(s)	163, 1310
LweI	GCATC	2 cut(s)	335, 1377
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	3 cut(s)	206, 1094, 1116
MaeIII	GTNAC	1 cut(s)	902
MalI	GATC	4 cut(s)	802, 1148, 1395, 1399
MbiI	CCGCTC	1 cut(s)	832
MboI	GATC	4 cut(s)	800, 1146, 1393, 1397
MflI	RGATCY	1 cut(s)	800
MhlI	GDGCHC	3 cut(s)	366, 810, 1320
MluCI	AATT	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	404, 713
MroNI	GCCGGC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	6 cut(s)	68, 344, 405, 846, 984, 1170
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	5 cut(s)	76, 841, 1110, 1163, 1341
MspR9I	CCNGG	3 cut(s)	77, 1163, 1342
Mva1269I	GAATGC	1 cut(s)	1217
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	185, 459, 765, 1235, 1337
NaeI	GCCGGC	1 cut(s)	842
NciI	CCSGG	3 cut(s)	77, 1163, 1342
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	800, 1146, 1393, 1397
NgoMIV	GCCGGC	1 cut(s)	840
NlaIII	CATG	9 cut(s)	130, 607, 742, 763, 889, 995, 1201, 1261, 1380
NlaIV	GGNNCC	3 cut(s)	33, 411, 802
NmeAIII	GCCGAG	1 cut(s)	235
NruI	TCGCGA	1 cut(s)	89
NspI	RCATGY	2 cut(s)	1201, 1380
PagI	TCATGA	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	686, 1113
PctI	GAATGC	1 cut(s)	1217
PdiI	GCCGGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	7 cut(s)	234, 274, 475, 600, 675, 964, 1012
PfoI	TCCNGGA	1 cut(s)	1161
PkrI	GCNGC	3 cut(s)	178, 831, 1300
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	1266
Psp124BI	GAGCTC	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	33, 411, 802
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	800
RruI	TCGCGA	1 cut(s)	89
RsaI	GTAC	2 cut(s)	113, 594
RsaNI	GTAC	2 cut(s)	112, 593
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	6 cut(s)	68, 344, 405, 846, 984, 1170
SatI	GCNGC	3 cut(s)	177, 830, 1299
Sau3AI	GATC	4 cut(s)	800, 1146, 1393, 1397
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	3 cut(s)	77, 1163, 1342
SduI	GDGCHC	3 cut(s)	366, 810, 1320
SfaNI	GCATC	2 cut(s)	335, 1377
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	509
SsiI	CCGC	6 cut(s)	174, 230, 539, 672, 830, 1347
SspI	AATATT	1 cut(s)	988
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	75, 1161, 1340
TaaI	ACNGT	6 cut(s)	73, 109, 116, 656, 902, 1322
TaiI	ACGT	3 cut(s)	209, 1097, 1119
TaqI	TCGA	4 cut(s)	729, 1029, 1136, 1396
TasI	AATT	1 cut(s)	509
TatI	WGTACW	2 cut(s)	111, 592
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	7 cut(s)	234, 274, 475, 600, 675, 964, 1012
Tru1I	TTAA	6 cut(s)	68, 344, 405, 846, 984, 1170
Tru9I	TTAA	6 cut(s)	68, 344, 405, 846, 984, 1170
TscAI	CASTG	3 cut(s)	121, 661, 860
TseI	GCWGC	2 cut(s)	176, 1298
TspDTI	ATGAA	7 cut(s)	143, 187, 592, 620, 902, 946, 980
TspGWI	ACGGA	7 cut(s)	42, 612, 793, 1197, 1248, 1287, 1360
TspRI	CASTG	3 cut(s)	121, 661, 860
XceI	RCATGY	2 cut(s)	1201, 1380
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.