pycom06g11140

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
16384257 .. 16384613
357 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGACTACTGATACAATTTATGTTGCTGAATTGGATAGTCTAGCAGTACAAGCATTCAAATTTAAAGAAAATCTAGGCGAGTCCTATGAGCAAGCAAAGATCTACAAGGGAAGGAAGAAAAAGTTTAATGGCAGCCCAATTCTTCATCACGAAATTCGTTTAGTGCAAAAATTGGGGGCATTAAATACAAGATTTAAGTCAGTTCAAGGAAGACACAAGCCTTGCCGGAAGGGACCTTATTTGCCTTCAAAGACTAATTCACCAAAAAGGATGGACAAGAAAGATTCAACCAGTGAATTTAAATGCAAATTTCAAGTCAATCCTTACCTACCATTGCCCTATGATGTTGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.59

Weight (kDa)

9.87

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 59, 153, 296, 308
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 5 cut(s) 58, 206, 249, 288, 314
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 4 cut(s) 59, 153, 296, 308
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 265
BfaI CTAG 2 cut(s) 41, 74
BglII AGATCT 1 cut(s) 99
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 332
BseGI GGATG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 291
BssMI GATC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 93
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 2 cut(s) 135, 220
CviKI_1 RGCY 2 cut(s) 135, 220
CviQI GTAC 1 cut(s) 47
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DraI TTTAAA 2 cut(s) 64, 301
Eco47I GGWCC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 233
FaiI YATR 3 cut(s) 21, 87, 342
FaqI GGGAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 2 cut(s) 41, 74
GluI GCNGC 1 cut(s) 133
HapII CCGG 1 cut(s) 226
HinfI GANTC 2 cut(s) 80, 284
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 105, 223, 255
HpyCH4V TGCA 3 cut(s) 166, 306, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 2 cut(s) 239, 304
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 2 cut(s) 41, 74
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 127, 134, 222
MflI RGATCY 1 cut(s) 99
MluCI AATT 9 cut(s) 15, 29, 59, 138, 153, 170, 256, 296, 308
MlyI GAGTC 1 cut(s) 89
MseI TTAA 5 cut(s) 63, 126, 182, 195, 300
MspI CCGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 234
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SaqAI TTAA 5 cut(s) 63, 126, 182, 195, 300
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 89
SetI ASST 2 cut(s) 238, 330
SinI GGWCC 1 cut(s) 233
SmiI ATTTAAAT 1 cut(s) 301
Sse9I AATT 9 cut(s) 15, 29, 59, 138, 153, 170, 256, 296, 308
SspMI CTAG 2 cut(s) 41, 74
SwaI ATTTAAAT 1 cut(s) 301
TasI AATT 9 cut(s) 15, 29, 59, 138, 153, 170, 256, 296, 308
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 5 cut(s) 63, 126, 182, 195, 300
Tru9I TTAA 5 cut(s) 63, 126, 182, 195, 300
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 4 cut(s) 59, 153, 296, 308
XspI CTAG 2 cut(s) 41, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.