Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16452105 .. 16453725

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTTGCAATGAGAAAAACCAAATTGGTTTTAACGTTGGTCGGAAGAGTCATAAACGAGGCTGTGAGCTTCATTGTGTTTTCGGTTCTTGACCTTGTTGATTTCATCCTTTGTTTTGTGTATAAAGTTGCTGATTTTTTCATCGAAGCAGAATGGAAACCTTGCTATTGCTCCTCCTCCAAGGAAGCCATTACCGGCAGTGGCAAAATCTTGGTCTCCGAACAAGGTGAGTCAAAAATTGTGTGCCTTAGCTCAACCAAGCTGCAGCTTGAGGAGATCTCGGACACGCTCTACACTCGCCCTTCGCTCTTGTCCGAGGTCTCAAAGCTGAGCATGAAGGAGATCAAGAAAGGAACTGCGATCGATCCACCTTCTCGGTCAACTCCACCATTGTTGAAATCCTTCAAGGGAAGATTGGAGGCCAACATTTGCATCCAATCCCCAGGTGGTCGGACTGTGATTGCAAATTTTGCACATCTTGGACCTCTAATTGCAAAGAAACACTCTTTGTTAAAACCGATGGACCTAGAGAGTATAAGGGACAAGAAGATGTGCTATTCATACATGGGTTCATTTCATCATCAGCATTTTGGACAGAGACATTGTTCCCAAACTTTTCAAGTGCTGCAAAATCAAGTTTTAGGCTTTTTGCTATTGATCTGTTGGGGTTTGGGAGGAGTCCAAAGCCAACCGACTCCATGTACACACTTAGAGAGCATCTGGAGATCATCGAAAGATCTGTGCTTGAACCCAACAAAGTTAAATCCTTCCACATTGTGGCTCATTCTTTGGGTTGCATTCTTGCCCTTGCTCTTGCTGTCAAACACCCTTCCTCCATCAAGTCCCTCACCTTACTTGCACCTCCATATTACCCAATACCAAAGGGAGAACAAGCAACACAATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006725 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010115 GO:0010143 GO:0010148 GO:0010345 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019222 GO:0019438 GO:0019747 GO:0019748 GO:0022622 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042044 GO:0042221 GO:0042335 GO:0043170 GO:0043207 GO:0043455 GO:0044237 GO:0044249 GO:0044464 GO:0044550 GO:0046890 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0090696 GO:0097305 GO:0098542 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1902584 GO:1902930 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

303

Amino Acids

33.9

Weight (kDa)

9.12

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	777
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	777
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	397, 406, 620, 748
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	5 cut(s)	69, 252, 262, 268, 328
AluI	AGCT	5 cut(s)	69, 252, 262, 268, 328
Alw26I	GTCTC	3 cut(s)	220, 325, 592
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	262, 265, 625
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	482, 523
AsuHPI	GGTGA	2 cut(s)	239, 840
AvaII	GGWCC	2 cut(s)	482, 523
BbvI	GCAGC	3 cut(s)	249, 277, 612
BccI	CCATC	2 cut(s)	514, 844
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	220, 325, 592
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	263
BglII	AGATCT	2 cut(s)	276, 736
BisI	GCNGC	3 cut(s)	263, 266, 626
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	3 cut(s)	264, 267, 627
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	2 cut(s)	482, 523
BmgT120I	GGNCC	2 cut(s)	482, 523
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	441, 726
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	742
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	906
BsaI	GGTCTC	2 cut(s)	220, 325
BsaJI	CCNNGG	3 cut(s)	180, 315, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	1 cut(s)	777
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	180, 315, 442
BseGI	GGATG	2 cut(s)	105, 432
BseLI	CCNNNNNNNGG	1 cut(s)	777
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	4 cut(s)	163, 166, 287, 690
BseXI	GCAGC	3 cut(s)	249, 277, 612
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	554, 828
BslI	CCNNNNNNNGG	1 cut(s)	777
BsmAI	GTCTC	3 cut(s)	220, 325, 592
BsmFI	GGGAC	2 cut(s)	554, 828
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	2 cut(s)	220, 325
Bsp1407I	TGTACA	1 cut(s)	701
Bsp143I	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
Bsp1720I	GCTNAGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	1 cut(s)	359
BspTNI	GGTCTC	2 cut(s)	220, 325
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	180, 315, 442
BssMI	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	906
BstDEI	CTNAG	3 cut(s)	248, 329, 709
BstF5I	GGATG	2 cut(s)	105, 432
BstKTI	GATC	7 cut(s)	279, 345, 363, 367, 660, 728, 739
BstMAI	GTCTC	3 cut(s)	220, 325, 592
BstMBI	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	249, 277, 612
BstX2I	RGATCY	2 cut(s)	276, 736
BstYI	RGATCY	2 cut(s)	276, 736
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	105, 432
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	482, 523
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	702
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	3 cut(s)	334, 565, 699
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	3 cut(s)	248, 329, 709
DpnI	GATC	7 cut(s)	278, 344, 362, 366, 659, 727, 738
DpnII	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
DraIII	CACNNNGTG	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	2 cut(s)	220, 325
Eco47I	GGWCC	2 cut(s)	482, 523
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	337, 568, 702
FaiI	YATR	8 cut(s)	53, 123, 335, 536, 562, 566, 700, 867
FaqI	GGGAC	2 cut(s)	554, 828
FatI	CATG	3 cut(s)	333, 564, 698
Fnu4HI	GCNGC	3 cut(s)	263, 266, 626
FokI	GGATG	2 cut(s)	92, 419
Fsp4HI	GCNGC	3 cut(s)	263, 266, 626
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	3 cut(s)	263, 266, 626
GsuI	CTGGAG	1 cut(s)	742
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	337, 568, 702
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	4 cut(s)	48, 230, 678, 694
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	239, 840
Hpy166II	GTNNAC	2 cut(s)	381, 704
Hpy188I	TCNGA	5 cut(s)	44, 220, 283, 316, 453
Hpy188III	TCNNGA	3 cut(s)	89, 346, 721
Hpy8I	GTNNAC	2 cut(s)	381, 704
HpyAV	CCTTC	6 cut(s)	312, 331, 381, 412, 777, 839
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	2 cut(s)	35, 905
HpyCH4V	TGCA	9 cut(s)	8, 265, 432, 464, 473, 494, 628, 797, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	3 cut(s)	248, 329, 709
HpySE526I	ACGT	2 cut(s)	35, 905
Hsp92II	CATG	3 cut(s)	337, 568, 702
Kzo9I	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	208, 429, 456, 706
Lsp1109I	GCAGC	3 cut(s)	249, 277, 612
LweI	GCATC	2 cut(s)	441, 726
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	2 cut(s)	35, 905
MalI	GATC	7 cut(s)	278, 344, 362, 366, 659, 727, 738
MboI	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
MboII	GAAGA	3 cut(s)	57, 423, 559
MflI	RGATCY	2 cut(s)	276, 736
MluCI	AATT	4 cut(s)	23, 237, 466, 489
MlyI	GAGTC	4 cut(s)	57, 239, 687, 688
MmeI	TCCRAC	2 cut(s)	22, 431
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	3 cut(s)	32, 512, 761
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
NlaIII	CATG	3 cut(s)	337, 568, 702
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	777
PkrI	GCNGC	3 cut(s)	264, 267, 627
Ple19I	CGATCG	1 cut(s)	363
PleI	GAGTC	4 cut(s)	56, 238, 686, 688
PpsI	GAGTC	4 cut(s)	56, 238, 686, 688
Ppu21I	YACGTR	1 cut(s)	906
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	482, 523
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	276, 736
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
SaqAI	TTAA	3 cut(s)	32, 512, 761
SatI	GCNGC	3 cut(s)	263, 266, 626
Sau3AI	GATC	7 cut(s)	276, 342, 360, 364, 657, 725, 736
Sau96I	GGNCC	2 cut(s)	482, 523
SchI	GAGTC	4 cut(s)	57, 239, 687, 688
ScrFI	CCNGG	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	441, 726
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	482, 523
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	23, 237, 466, 489
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	2 cut(s)	38, 908
TaqI	TCGA	3 cut(s)	144, 363, 731
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	23, 237, 466, 489
TatI	WGTACW	1 cut(s)	701
Tru1I	TTAA	3 cut(s)	32, 512, 761
Tru9I	TTAA	3 cut(s)	32, 512, 761
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	262, 265, 625
TspDTI	ATGAA	7 cut(s)	61, 94, 130, 350, 549, 561, 566
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	777
VpaK11BI	GGWCC	2 cut(s)	482, 523
XapI	RAATTY	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.