Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16704860 .. 16705319

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCCTTGTTTCTTTTACATGAGCACTCAACAATTTGGTGTTACTTGTTTGTAACTGTGTCCAGTTCAAGCACTTTTAATTATTGTTGGTGGGTCTGTGAAAGATCACTTAACAATACACAGAATGGTTCTAGCATGCCACCAGTGCAGAATTTTGTGAGAGCGGAAATGCTGTCGAGCTATGTACCTGAAGTGTTGCGCCCGCTTTATGAGTCATCAACACTTCTTGCTCAGAAGACAAGTATGGCAGTAAGATTGTTTTCTCCTGATCGATGTCATCTTGTTTGGATATTAAAATTTCTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

7.7

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	2 cut(s)	164, 203
AcsI	RAATTY	2 cut(s)	151, 296
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	27
ApoI	RAATTY	2 cut(s)	151, 296
AspLEI	GCGC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	63, 143
BseCI	ATCGAT	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	63, 143
BsgI	GTGCAG	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	104, 268
BspACI	CCGC	2 cut(s)	164, 203
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	63, 143
BssMI	GATC	2 cut(s)	104, 268
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	137, 203
BstDEI	CTNAG	2 cut(s)	231, 302
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	107, 271
BstMBI	GATC	2 cut(s)	104, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	137, 203
CfoI	GCGC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	2 cut(s)	20, 136
CviJI	RGCY	1 cut(s)	180
CviKI_1	RGCY	1 cut(s)	180
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	231, 302
DpnI	GATC	2 cut(s)	106, 270
DpnII	GATC	2 cut(s)	104, 268
Eco57I	CTGAAG	1 cut(s)	210
FaeI	CATG	2 cut(s)	23, 139
FaiI	YATR	5 cut(s)	21, 137, 183, 210, 245
FatI	CATG	2 cut(s)	19, 135
FauI	CCCGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	23, 139
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	231, 302
Hsp92II	CATG	2 cut(s)	23, 139
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	104, 268
LpnPI	CCDG	4 cut(s)	76, 156, 201, 279
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	41, 52
MalI	GATC	2 cut(s)	106, 270
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	104, 268
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	33, 79, 151, 296
MlyI	GAGTC	1 cut(s)	221
MseI	TTAA	3 cut(s)	78, 111, 293
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	104, 268
NlaIII	CATG	2 cut(s)	23, 139
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	78, 111, 293
Sau3AI	GATC	2 cut(s)	104, 268
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	2 cut(s)	182, 190
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	4 cut(s)	33, 79, 151, 296
SsiI	CCGC	2 cut(s)	164, 203
SspMI	CTAG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	176, 271
TasI	AATT	4 cut(s)	33, 79, 151, 296
Tru1I	TTAA	3 cut(s)	78, 111, 293
Tru9I	TTAA	3 cut(s)	78, 111, 293
TscAI	CASTG	1 cut(s)	150
TspRI	CASTG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	151, 296
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.