pycom06g11600

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
16854240 .. 16855890
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGATTGTTTTCTGTAATTTTCATCTGGTATCAGCAACTCCTTTATCGCATCGGAATAATGAAGCGGAGAAATTGGATTCAATATCAGATATCCCAGAATATAAAGACAAAAGTCATGAAGAACTCCGTTGGGAGGATAAAGCTAATGGACAATCATCTAGAAGGCCAAGTCTGTTCCCATCGGCCTTTGAGCGTGAGCGGAACAACAACGATGCTTCTGCTCCCAATCTCTGCAGGTGCAGTCAGAATTGTGTATTTGGCACAGAACCTCTCTCCACAACAACTGGTGCTTCATCCGCGCAAACTTTTAAAAATACAATGCCTCCTTCGGAGCATCTTCTACACGTAGCTCATCATCATCAATTATTGGTAAGTTTCTGGTTGTCTGTTCCCTTTGGTTTGCCATGTATCTGGAACTTTGACATTGCGAGCACACCAGCTTTTGGTACTACAAGCTTTGTGCTCTTTGGTTTGACAACAAGTCCTACGTTTGGAAGCACAGGAGCTGCATTTGGATTTGGGATATCTAGTGGAGCGTTGGTTTCATGCACCCCTTGGTTTCATGCACCCCGGCTTTGGGTTCATCTAGCTCTATCTTTGGCACTTCAAGCCACCCCAATTTTGATGCAAGTGGTCCTCGTTTTGATCAACCCTTCATCAACTCATGCGTCATCAATTGCTGCACACCGCCTTCAGGCGGTGGAGCCACTCTACCAATTTTTGGGGGCCAACAACGCAGGGATGAAGGTGGTTCAGCTCCTGCTGTTAGGAGTGGCTTTGGCACTACTACCTCACAGCCAAACCCCTTTGAATCCTGTACAGACATTTTCTCATGCTTCGAGTCCTTTTAATGCCACAATGTTTACTCCAAAAGCTCCATCCTTCACTAATACAGGTTTTACAACAACGTCTACGCCATTCAGTTCATCGAGTTTTGCGATTTCTTGTACTTCAACCAGGTCCTTTTACACTGCCACAAACCTCATCTCTGACTCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

334

Amino Acids

36.04

Weight (kDa)

6.91

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 225
AccB7I CCANNNNNTGG 2 cut(s) 443, 721
AccBSI CCGCTC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 911
AccII CGCG 1 cut(s) 299
AciI CCGC 5 cut(s) 65, 199, 297, 688, 698
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 3 cut(s) 448, 819, 949
AfiI CCNNNNNNNGG 8 cut(s) 133, 443, 491, 576, 577, 694, 697, 721
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 4 cut(s) 81, 608, 811, 954
AhdI GACNNNNNGTC 1 cut(s) 480
AjnI CCWGG 1 cut(s) 956
AluBI AGCT 8 cut(s) 143, 350, 440, 456, 506, 590, 757, 875
AluI AGCT 8 cut(s) 143, 350, 440, 456, 506, 590, 757, 875
Alw21I GWGCWC 2 cut(s) 434, 465
AlwNI CAGNNNCTG 2 cut(s) 506, 760
AoxI GGCC 3 cut(s) 164, 183, 726
ApeKI GCWGC 2 cut(s) 506, 680
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 3 cut(s) 634, 726, 960
AsuC2I CCSGG 1 cut(s) 571
AvaII GGWCC 2 cut(s) 634, 960
Bbv12I GWGCWC 2 cut(s) 434, 465
BbvI GCAGC 2 cut(s) 493, 667
BccI CCATC 2 cut(s) 187, 886
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 958
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 571
BfaI CTAG 3 cut(s) 159, 528, 587
BfmI CTRYAG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 225
BisI GCNGC 2 cut(s) 507, 681
BlsI GCNGC 2 cut(s) 508, 682
Bme1390I CCNGG 2 cut(s) 571, 958
Bme18I GGWCC 2 cut(s) 634, 960
BmeRI GACNNNNNGTC 1 cut(s) 480
BmgT120I GGNCC 3 cut(s) 634, 726, 960
BmiI GGNNCC 2 cut(s) 705, 727
BmrFI CCNGG 2 cut(s) 571, 958
BmsI GCATC 4 cut(s) 58, 202, 343, 615
BoxI GACNNNNGTC 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 571
BsaAI YACGTR 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 554, 569
BsaXI ACNNNNNCTCC 4 cut(s) 307, 337, 525, 555
Bsc4I CCNNNNNNNGG 8 cut(s) 133, 443, 491, 576, 577, 694, 697, 721
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 958
BseDI CCNNGG 2 cut(s) 554, 569
BseGI GGATG 3 cut(s) 293, 747, 878
BseLI CCNNNNNNNGG 8 cut(s) 133, 443, 491, 576, 577, 694, 697, 721
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 493, 667
BsgI GTGCAG 2 cut(s) 259, 666
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 3 cut(s) 166, 185, 728
BsiHKAI GWGCWC 2 cut(s) 434, 465
BsiSI CCGG 1 cut(s) 571
BslI CCNNNNNNNGG 8 cut(s) 133, 443, 491, 576, 577, 694, 697, 721
BsnI GGCC 3 cut(s) 166, 185, 728
Bsp1286I GDGCHC 2 cut(s) 434, 465
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 1 cut(s) 645
BspACI CCGC 5 cut(s) 65, 199, 297, 688, 698
BspANI GGCC 3 cut(s) 166, 185, 728
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 705, 727
BspMAI CTGCAG 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 554, 569
BssMI GATC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 958
BstAUI TGTACA 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 430
BstF5I GGATG 3 cut(s) 293, 747, 878
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 648
BstMBI GATC 1 cut(s) 645
BstMWI GCNNNNNNNGC 3 cut(s) 296, 608, 734
BstNI CCWGG 1 cut(s) 958
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 569, 956
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 493, 667
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuRI GGCC 3 cut(s) 166, 185, 728
BtsCI GGATG 3 cut(s) 293, 747, 878
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 1 cut(s) 969
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 430
CaiI CAGNNNCTG 2 cut(s) 506, 760
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 3 cut(s) 634, 726, 960
CseI GACGC 1 cut(s) 657
CsiI ACCWGGT 1 cut(s) 956
Csp6I GTAC 3 cut(s) 447, 818, 948
CviAII CATG 6 cut(s) 116, 405, 546, 563, 665, 833
CviQI GTAC 3 cut(s) 447, 818, 948
DpnI GATC 1 cut(s) 647
DpnII GATC 1 cut(s) 645
DraI TTTAAA 1 cut(s) 310
DriI GACNNNNNGTC 1 cut(s) 480
Eam1105I GACNNNNNGTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 554
Eco32I GATATC 2 cut(s) 91, 525
Eco47I GGWCC 2 cut(s) 634, 960
Eco57I CTGAAG 1 cut(s) 677
EcoO109I RGGNCCY 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 956
EcoRV GATATC 2 cut(s) 91, 525
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 6 cut(s) 119, 408, 549, 566, 668, 836
FaiI YATR 7 cut(s) 102, 117, 406, 547, 564, 666, 834
FatI CATG 6 cut(s) 115, 404, 545, 562, 664, 832
FbaI TGATCA 1 cut(s) 645
FblI GTMKAC 1 cut(s) 911
Fnu4HI GCNGC 2 cut(s) 507, 681
FokI GGATG 3 cut(s) 280, 754, 865
Fsp4HI GCNGC 2 cut(s) 507, 681
FspBI CTAG 3 cut(s) 159, 528, 587
GlaI GCGC 1 cut(s) 300
GluI GCNGC 2 cut(s) 507, 681
HaeIII GGCC 3 cut(s) 166, 185, 728
HapII CCGG 1 cut(s) 571
HgaI GACGC 1 cut(s) 657
HhaI GCGC 1 cut(s) 301
Hin1II CATG 6 cut(s) 119, 408, 549, 566, 668, 836
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 4 cut(s) 77, 811, 841, 992
HpaII CCGG 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 864, 912
Hpy188I TCNGA 5 cut(s) 54, 88, 246, 331, 991
Hpy188III TCNNGA 3 cut(s) 116, 159, 412
Hpy8I GTNNAC 2 cut(s) 864, 912
HpyAV CCTTC 6 cut(s) 156, 336, 663, 701, 739, 892
HpyCH4IV ACGT 3 cut(s) 345, 488, 908
HpyCH4V TGCA 7 cut(s) 234, 240, 509, 549, 566, 628, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 608, 734
HpySE526I ACGT 3 cut(s) 345, 488, 908
Hsp92II CATG 6 cut(s) 119, 408, 549, 566, 668, 836
HspAI GCGC 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 1 cut(s) 645
LmnI GCTCC 7 cut(s) 226, 331, 503, 533, 703, 762, 880
Lsp1109I GCAGC 2 cut(s) 493, 667
LweI GCATC 4 cut(s) 58, 202, 343, 615
MabI ACCWGGT 1 cut(s) 956
MaeI CTAG 3 cut(s) 159, 528, 587
MaeII ACGT 3 cut(s) 345, 488, 908
MalI GATC 1 cut(s) 647
MbiI CCGCTC 1 cut(s) 199
MboI GATC 1 cut(s) 645
MboII GAAGA 2 cut(s) 131, 329
MfeI CAATTG 1 cut(s) 675
MhlI GDGCHC 2 cut(s) 434, 465
MluCI AATT 7 cut(s) 16, 71, 247, 362, 618, 675, 716
MlyI GAGTC 2 cut(s) 850, 986
MnlI CCTC 6 cut(s) 127, 279, 333, 647, 801, 992
MseI TTAA 2 cut(s) 309, 849
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 571, 958
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 958
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 296, 608, 734
NciI CCSGG 1 cut(s) 571
NdeII GATC 1 cut(s) 645
NlaIII CATG 6 cut(s) 119, 408, 549, 566, 668, 836
NlaIV GGNNCC 2 cut(s) 705, 727
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 935
PfeI GAWTC 2 cut(s) 77, 811
PflMI CCANNNNNTGG 2 cut(s) 443, 721
PkrI GCNGC 2 cut(s) 508, 682
PleI GAGTC 2 cut(s) 849, 986
PpsI GAGTC 2 cut(s) 849, 986
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 960
PshAI GACNNNNGTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 960
Psp6I CCWGG 1 cut(s) 956
PspGI CCWGG 1 cut(s) 956
PspN4I GGNNCC 2 cut(s) 705, 727
PspPI GGNCC 3 cut(s) 634, 726, 960
PspPPI RGGWCCY 1 cut(s) 960
PstI CTGCAG 1 cut(s) 236
PstNI CAGNNNCTG 2 cut(s) 506, 760
RsaI GTAC 3 cut(s) 448, 819, 949
RsaNI GTAC 3 cut(s) 447, 818, 948
SaqAI TTAA 2 cut(s) 309, 849
SatI GCNGC 2 cut(s) 507, 681
Sau3AI GATC 1 cut(s) 645
Sau96I GGNCC 3 cut(s) 634, 726, 960
SchI GAGTC 2 cut(s) 850, 986
ScrFI CCNGG 2 cut(s) 571, 958
SduI GDGCHC 2 cut(s) 434, 465
SexAI ACCWGGT 1 cut(s) 956
SfaNI GCATC 4 cut(s) 58, 202, 343, 615
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 2 cut(s) 634, 960
Sse9I AATT 7 cut(s) 16, 71, 247, 362, 618, 675, 716
SsiI CCGC 5 cut(s) 65, 199, 297, 688, 698
SspMI CTAG 3 cut(s) 159, 528, 587
StyD4I CCNGG 2 cut(s) 569, 956
StyI CCWWGG 1 cut(s) 554
TaiI ACGT 3 cut(s) 348, 491, 911
TaqI TCGA 2 cut(s) 839, 929
TasI AATT 7 cut(s) 16, 71, 247, 362, 618, 675, 716
TatI WGTACW 2 cut(s) 817, 947
TfiI GAWTC 2 cut(s) 77, 811
Tru1I TTAA 2 cut(s) 309, 849
Tru9I TTAA 2 cut(s) 309, 849
TscAI CASTG 1 cut(s) 976
TseI GCWGC 2 cut(s) 506, 680
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 976
Van91I CCANNNNNTGG 2 cut(s) 443, 721
VpaK11BI GGWCC 2 cut(s) 634, 960
XbaI TCTAGA 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 911
XspI CTAG 3 cut(s) 159, 528, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.