pycom06g11790

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
16988434 .. 16988956
523 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGTCCTTTATCTCCGCTACTGTTGAGACCGTTTTTCTCAATGGTATGTTCCGCCCGATTCCCGAGCTTCCCGACGGAGCGTCCACTTCTGACGAGGCATCCGAGGACGATGTCGGCAGCGTCCCTATCTCTACAGACATGTGGAGGCTTCGAGATCTGAGTCACAACTCTGGTTCCTCATCCCGGTTCACCAGTTCCCGATCCGCCAGGGCCTCCTCGCTGAAACGCAAGCAATATGCCGCAGCCGACGAGTCCTCCACCAAGTTACTTCAGCTTCAGCAACACGCGGATCTAGATCTCCGGTTGACCCCGACCTTGTCTTTTAAACCCAAGACCAATCCAGATACCCGACGACCGGGAACCCCGTCCATGAACTCAGATGAGTCCGACGTCACCATGTGCTTCGAGAGTAGGTTCAAAGATCAACACTTGTACTCTTACGTCGTTGGATCGGAGAGAAAGCTACTCAACTTGTTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

161

Amino Acids

17.84

Weight (kDa)

5.91

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccII CGCG 1 cut(s) 287
AciI CCGC 5 cut(s) 15, 52, 204, 240, 287
AclWI GGATC 3 cut(s) 195, 297, 457
AcuI CTGAAG 2 cut(s) 254, 260
AcyI GRCGYC 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 183, 355
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 418
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 67, 274, 463
AluI AGCT 3 cut(s) 67, 274, 463
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 3 cut(s) 195, 297, 457
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 117, 242
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 184, 357
AsuHPI GGTGA 2 cut(s) 181, 385
AvaI CYCGRG 1 cut(s) 62
BbvI GCAGC 2 cut(s) 129, 254
BciT130I CCWGG 1 cut(s) 208
BcnI CCSGG 2 cut(s) 184, 357
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 132
BglII AGATCT 2 cut(s) 154, 295
BisI GCNGC 3 cut(s) 118, 240, 243
BlsI GCNGC 3 cut(s) 119, 241, 244
Bme1390I CCNGG 3 cut(s) 184, 208, 357
BmeRI GACNNNNNGTC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 175, 361
BmrFI CCNGG 3 cut(s) 184, 208, 357
BmsI GCATC 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 184, 357
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 102, 207
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 355
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 102, 207
BseGI GGATG 2 cut(s) 98, 179
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 183, 355
BseMII CTCAG 2 cut(s) 149, 390
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 129, 254
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 184, 301, 356
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 183, 355
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 6 cut(s) 154, 200, 289, 295, 421, 449
BspACI CCGC 5 cut(s) 15, 52, 204, 240, 287
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 150, 389
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 175, 361
BspPI GGATC 3 cut(s) 195, 297, 457
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 102, 207
BssMI GATC 6 cut(s) 154, 200, 289, 295, 421, 449
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 22, 31
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 158, 376
BstF5I GGATG 2 cut(s) 98, 179
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 6 cut(s) 157, 203, 292, 298, 424, 452
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 6 cut(s) 154, 200, 289, 295, 421, 449
BstMCI CGRYCG 1 cut(s) 356
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 182, 206, 355
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 129, 254
BstX2I RGATCY 3 cut(s) 154, 289, 295
BstYI RGATCY 3 cut(s) 154, 289, 295
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 98, 179
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 2 cut(s) 69, 109
Csp6I GTAC 1 cut(s) 433
CviAII CATG 3 cut(s) 139, 370, 397
CviJI RGCY 6 cut(s) 67, 148, 212, 245, 274, 463
CviKI_1 RGCY 6 cut(s) 67, 148, 212, 245, 274, 463
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 158, 376
DpnI GATC 6 cut(s) 156, 202, 291, 297, 423, 451
DpnII GATC 6 cut(s) 154, 200, 289, 295, 421, 449
DraI TTTAAA 1 cut(s) 325
DraIII CACNNNGTG 1 cut(s) 399
DriI GACNNNNNGTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 79
EciI GGCGGA 2 cut(s) 41, 193
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 254, 260
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 142, 373, 400
FaiI YATR 5 cut(s) 47, 140, 237, 371, 398
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 138, 369, 396
Fnu4HI GCNGC 3 cut(s) 118, 240, 243
FokI GGATG 2 cut(s) 85, 166
Fsp4HI GCNGC 3 cut(s) 118, 240, 243
FspBI CTAG 1 cut(s) 293
GluI GCNGC 3 cut(s) 118, 240, 243
HaeIII GGCC 1 cut(s) 212
HapII CCGG 3 cut(s) 184, 301, 356
HgaI GACGC 2 cut(s) 69, 109
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 3 cut(s) 142, 373, 400
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 4 cut(s) 58, 160, 251, 383
HpaII CCGG 3 cut(s) 184, 301, 356
HphI GGTGA 2 cut(s) 181, 385
Hpy166II GTNNAC 3 cut(s) 84, 189, 306
Hpy188I TCNGA 7 cut(s) 91, 103, 159, 379, 388, 454, 482
Hpy188III TCNNGA 7 cut(s) 62, 71, 152, 198, 293, 341, 406
Hpy8I GTNNAC 3 cut(s) 84, 189, 306
Hpy99I CGWCG 5 cut(s) 77, 251, 354, 392, 446
HpyCH4III ACNGT 2 cut(s) 22, 31
HpyCH4IV ACGT 2 cut(s) 390, 441
HpyF3I CTNAG 2 cut(s) 158, 376
HpySE526I ACGT 2 cut(s) 390, 441
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 3 cut(s) 142, 373, 400
Kzo9I GATC 6 cut(s) 154, 200, 289, 295, 421, 449
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 156, 193, 197, 205, 220, 314, 354, 369
Lsp1109I GCAGC 2 cut(s) 129, 254
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 390, 441
MaeIII GTNAC 3 cut(s) 161, 264, 391
MalI GATC 6 cut(s) 156, 202, 291, 297, 423, 451
MboI GATC 6 cut(s) 154, 200, 289, 295, 421, 449
MflI RGATCY 3 cut(s) 154, 289, 295
MlyI GAGTC 3 cut(s) 169, 260, 392
MmeI TCCRAC 2 cut(s) 411, 427
MnlI CCTC 7 cut(s) 88, 97, 138, 187, 223, 226, 265
MseI TTAA 1 cut(s) 324
MspI CCGG 3 cut(s) 184, 301, 356
MspR9I CCNGG 3 cut(s) 184, 208, 357
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 287
NciI CCSGG 2 cut(s) 184, 357
NdeII GATC 6 cut(s) 154, 200, 289, 295, 421, 449
NlaIII CATG 3 cut(s) 142, 373, 400
NlaIV GGNNCC 2 cut(s) 175, 361
NmuCI GTSAC 2 cut(s) 161, 391
NspI RCATGY 1 cut(s) 142
PciI ACATGT 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 58
PflFI GACNNNGTC 2 cut(s) 110, 316
PkrI GCNGC 3 cut(s) 119, 241, 244
PleI GAGTC 3 cut(s) 168, 259, 391
PpsI GAGTC 3 cut(s) 168, 259, 391
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 175, 361
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 3 cut(s) 154, 289, 295
PsyI GACNNNGTC 2 cut(s) 110, 316
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 3 cut(s) 118, 240, 243
Sau3AI GATC 6 cut(s) 154, 200, 289, 295, 421, 449
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 3 cut(s) 169, 260, 392
ScrFI CCNGG 3 cut(s) 184, 208, 357
SetI ASST 7 cut(s) 69, 276, 317, 393, 416, 444, 465
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 132
SsiI CCGC 5 cut(s) 15, 52, 204, 240, 287
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 182, 206, 355
TaaI ACNGT 2 cut(s) 22, 31
TaiI ACGT 2 cut(s) 393, 444
TaqI TCGA 2 cut(s) 151, 405
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 2 cut(s) 161, 391
TseI GCWGC 2 cut(s) 117, 242
Tsp45I GTSAC 2 cut(s) 161, 391
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 90
Tth111I GACNNNGTC 2 cut(s) 110, 316
XbaI TCTAGA 1 cut(s) 292
XceI RCATGY 1 cut(s) 142
XspI CTAG 1 cut(s) 293
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.