pycom06g11880

Respiratory burst oxidase homolog protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
17084086 .. 17085231
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGACACTAGATTTCCAAGAGTGTTGATAGATGGACCCTATGGAGCACCAGCTCAAGAATACAAGACCTATGAAGTGGTGTTGTTGGTAGGGCTAGGGATTGGGGCGACCCCAATGATTAGCATTTTGAAGGACATAGTGAACAATATCAAGGCCATGGAGGAAGAGGAGGAGGACAATGCTTTAGAAAATGTTGGTGGTGGTGGTGGTGGCGGCACCAAGTTACCACACAAATCATCAAAAACACATACTGGATCGAGCCTTTATGGGACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

93

Amino Acids

9.7

Weight (kDa)

5.0

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_6 PF08030 24 - 51 7.3e-08 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 262
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 49
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 49
BccI CCATC 1 cut(s) 26
BfaI CTAG 2 cut(s) 9, 95
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 37, 217
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 2 cut(s) 182, 185
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 49
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 37, 217
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 1 cut(s) 157
CviJI RGCY 4 cut(s) 53, 94, 155, 261
CviKI_1 RGCY 4 cut(s) 53, 94, 155, 261
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 7 cut(s) 42, 72, 137, 158, 249, 267, 277
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 2 cut(s) 9, 95
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 63, 237
MaeI CTAG 2 cut(s) 9, 95
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 49
MnlI CCTC 4 cut(s) 154, 160, 163, 166
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 254
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 37, 217
PkrI GCNGC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 37, 217
PspPI GGNCC 1 cut(s) 35
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 55, 71
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 9, 95
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 257
TauI GCSGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 35
XspI CTAG 2 cut(s) 9, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.