pycom06g12110

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
17277379 .. 17279062
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGGTCTTCAGTAGCTCGACTGGGCTTTATGAGTATGATCATGATGCGTCAAAAGCTACGGAGCTTGAAGTGTCAATTAGAATTAAAGTGATAATACGTAAAAAGTTCTCAAAGGTGGTTACAGTGGAGACCAATATTCAGAACACAGTGGACAAGTCTTTACAAGCTAATCCTACTGGATCCTGGGCCTCGACAGATGCTCTCATGAGACGACTTTTTCTCAGCTCCTCCAACTCCGTGTCGTCTGCATGCGATGCTGCTACTACTGCTGCAGCTTTTACTTGTTCATCTTCTTCTACTTTTAGGGTTTCTAACTCCTTCAACTCCATTACATTATCAGCAGAGTTCATCAAAACCACAGCAGCACTCATCTCTCTCTCTTTCTCTAATTTCGAGTTCGAGTTCGATCTGCAGGATGGAGAGAGTTACATAGCTGAGTTGTTCATAAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

152

Amino Acids

16.49

Weight (kDa)

4.93

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 174, 187
AcsI RAATTY 1 cut(s) 448
AgsI TTSAA 2 cut(s) 68, 322
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 7 cut(s) 15, 56, 64, 167, 225, 275, 434
AluI AGCT 7 cut(s) 15, 56, 64, 167, 225, 275, 434
Alw26I GTCTC 2 cut(s) 122, 202
AlwI GGATC 2 cut(s) 174, 187
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 4 cut(s) 257, 269, 272, 362
ApoI RAATTY 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 244, 256, 284, 374
BccI CCATC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 122, 202
BfmI CTRYAG 2 cut(s) 270, 410
BisI GCNGC 4 cut(s) 258, 270, 273, 363
BlsI GCNGC 4 cut(s) 259, 271, 274, 364
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 34, 187, 244
BmuI ACTGGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 183
Bse1I ACTGG 2 cut(s) 25, 181
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 235, 426
BseNI ACTGG 2 cut(s) 25, 181
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 4 cut(s) 244, 256, 284, 374
BshFI GGCC 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 122, 202
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 37, 179, 406
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 234, 427
BspHI TCATGA 2 cut(s) 40, 204
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 2 cut(s) 274, 414
BspPI GGATC 2 cut(s) 174, 187
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 25, 181
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 37, 179, 406
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 124, 148
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 221, 435
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 3 cut(s) 40, 182, 409
BstMAI GTCTC 2 cut(s) 122, 202
BstMBI GATC 3 cut(s) 37, 179, 406
BstMWI GCNNNNNNNGC 3 cut(s) 53, 254, 266
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 2 cut(s) 270, 410
BstSNI TACGTA 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 244, 256, 284, 374
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 129, 153
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 2 cut(s) 40, 204
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 36
CviAII CATG 3 cut(s) 41, 205, 249
CviJI RGCY 9 cut(s) 15, 25, 56, 64, 167, 188, 225, 275, 434
CviKI_1 RGCY 9 cut(s) 15, 25, 56, 64, 167, 188, 225, 275, 434
DdeI CTNAG 2 cut(s) 221, 435
DpnI GATC 3 cut(s) 39, 181, 408
DpnII GATC 3 cut(s) 37, 179, 406
Eco105I TACGTA 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 3 cut(s) 44, 208, 252
FaiI YATR 8 cut(s) 30, 36, 42, 206, 250, 431, 446, 454
FatI CATG 3 cut(s) 40, 204, 248
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 258, 270, 273, 363
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 4 cut(s) 258, 270, 273, 363
GluI GCNGC 4 cut(s) 258, 270, 273, 363
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 44, 208, 252
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 41, 205
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 124, 148
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 248, 272, 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 254, 266
HpyF3I CTNAG 2 cut(s) 221, 435
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 44, 208, 252
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 37, 179, 406
LmnI GCTCC 2 cut(s) 61, 230
LpnPI CCDG 5 cut(s) 6, 162, 169, 196, 398
Lsp1109I GCAGC 4 cut(s) 244, 256, 284, 374
LweI GCATC 3 cut(s) 34, 187, 244
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 118, 425
MalI GATC 3 cut(s) 39, 181, 408
MboI GATC 3 cut(s) 37, 179, 406
MboII GAAGA 2 cut(s) 282, 285
MflI RGATCY 1 cut(s) 179
MluCI AATT 4 cut(s) 75, 81, 388, 448
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 2 cut(s) 199, 238
MseI TTAA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 53, 254, 266
NdeII GATC 3 cut(s) 37, 179, 406
NlaIII CATG 3 cut(s) 44, 208, 252
NlaIV GGNNCC 1 cut(s) 181
NspI RCATGY 1 cut(s) 252
PaeI GCATGC 1 cut(s) 252
PagI TCATGA 2 cut(s) 40, 204
PkrI GCNGC 4 cut(s) 259, 271, 274, 364
Ppu21I YACGTR 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 2 cut(s) 274, 414
PsuI RGATCY 1 cut(s) 179
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 258, 270, 273, 363
Sau3AI GATC 3 cut(s) 37, 179, 406
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 184
SetI ASST 9 cut(s) 17, 58, 66, 100, 117, 169, 227, 277, 436
SfaNI GCATC 3 cut(s) 34, 187, 244
SfcI CTRYAG 2 cut(s) 270, 410
SnaBI TACGTA 1 cut(s) 98
SphI GCATGC 1 cut(s) 252
Sse9I AATT 4 cut(s) 75, 81, 388, 448
SspI AATATT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 124, 148
TaiI ACGT 1 cut(s) 100
TaqI TCGA 5 cut(s) 17, 191, 393, 399, 405
TasI AATT 4 cut(s) 75, 81, 388, 448
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 129, 153
TseI GCWGC 4 cut(s) 257, 269, 272, 362
TspDTI ATGAA 3 cut(s) 276, 337, 433
TspGWI ACGGA 2 cut(s) 74, 226
TspRI CASTG 2 cut(s) 129, 153
XapI RAATTY 1 cut(s) 448
XceI RCATGY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.