pycom06g12280
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016332
Physical Location & Seq
Forward (+)
17442820 .. 17444039
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGGCATTGGAGTCTATGAATCATGAAGCTGCCAGTCCTAGACCTGACCAAGCTGACAAGCAGCAAACGCCGAACGGGAGCAGTGAAGACAAAACGAAGATCACGAGGCACCCTCGATGGACCAGACATGAGACCTTTGTCCTCATAGAGGGCAAGAGGGTCGTGGAGAATGCAGTCCAGAGGGGCCAGCGATCTACTTCAGCGTTGGGGGCAGAAAATTTCGAACCCAAGTGGGATTTGGTCTCGTCTTACTGCAGGCAGCGCGGCATGAGCAGATTGCCGGTTCAGTGCAGGAAAAGATGGAGCAATCTGCTTGTGGATTTTAAGAAAATCAGGAACTGGGAGGCACAGATAGAGCGAGAGGCCGAGTCTTTTTGGGTGATGAGGAATGATGCGAGGAGGGAGAGGAGGCTGCCTGGGTTCTTTGATCGGGAGGTTTACAATGTGTTGGATGGAAAGGAAGTGACTGCAACGGAAGCCTGTCCACTGGCATTGTTTATGCCGGGGCAAACAGATGCGATGGATGGTGATGGAACAGAGGAGGCGGCTGCAGAGGAAGAGGAGGAGGAGGAAGGACCTGAGAAAGATTTACATGGCGGTGGAGATGATATGGCAGAAGATGGATTATGTTCAGATTTTGAGGAGTCTGGGCAAGACAAGACAGTCAAGAAATCAAAGAACGAAAACATTATGCAAGAAAGTCCAACAAAAACAGTCACAACTCCAATGCCTAATTCAGGGGTGGTAAAGGAGAAACGAAGTCTAGGCTCAAAGACTTCTGGAGAAAATATTTATCAGGAGAAATGGAAGCAGAGGCGGGTGTCGACAGATGAAAGCGAACACAGCAGCAACATCGACCAGCTGGTCAAAGTTCTGGAAAGGAACAGCAACATGCTGAGTGCGCAACTTGAAGCTCATAACATAAATTGCCATTTAGAAAGGGAACAAAGGAAGGAGCAAAACAACAGCATACTCGCTGCTCTCGGCAAGGTCACAGATGTTCTAGCAAGAATTGCTGACAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

343

Amino Acids

38.85

Weight (kDa)

5.37

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 128 3.3e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 662, 863
Acc16I TGCGCA 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 824
AccII CGCG 1 cut(s) 264
AciI CCGC 4 cut(s) 264, 545, 597, 817
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 148, 737
AgsI TTSAA 1 cut(s) 911
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 718, 750
AluBI AGCT 4 cut(s) 29, 53, 862, 914
AluI AGCT 4 cut(s) 29, 53, 862, 914
Alw26I GTCTC 2 cut(s) 125, 247
AlwNI CAGNNNCTG 1 cut(s) 339
AoxI GGCC 2 cut(s) 184, 363
ApeKI GCWGC 7 cut(s) 29, 61, 259, 412, 548, 846, 977
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 2 cut(s) 264, 904
AspS9I GGNCC 3 cut(s) 120, 184, 575
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 391, 539
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 2 cut(s) 120, 575
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 7 cut(s) 16, 73, 271, 399, 535, 858, 964
BccI CCATC 7 cut(s) 111, 294, 446, 514, 518, 524, 614
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 835, 869
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 125, 247
BfaI CTAG 3 cut(s) 39, 764, 1004
BfmI CTRYAG 2 cut(s) 253, 549
BisI GCNGC 9 cut(s) 30, 62, 260, 265, 413, 546, 549, 847, 978
BlsI GCNGC 9 cut(s) 31, 63, 261, 266, 414, 547, 550, 848, 979
Bme1390I CCNGG 2 cut(s) 417, 504
Bme18I GGWCC 2 cut(s) 120, 575
BmgT120I GGNCC 3 cut(s) 120, 184, 575
BmiI GGNNCC 2 cut(s) 110, 185
BmrFI CCNGG 2 cut(s) 417, 504
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 382, 505
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 504
BsaI GGTCTC 2 cut(s) 125, 247
BsaJI CCNNGG 2 cut(s) 416, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 737
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 33, 344, 492
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 416, 503
BseGI GGATG 2 cut(s) 457, 529
BseLI CCNNNNNNNGG 2 cut(s) 148, 737
BseMII CTCAG 2 cut(s) 570, 887
BseNI ACTGG 3 cut(s) 33, 344, 492
BseRI GAGGAG 7 cut(s) 412, 421, 554, 575, 578, 581, 656
BseXI GCAGC 7 cut(s) 16, 73, 271, 399, 535, 858, 964
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 186, 365
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 281, 503
BslI CCNNNNNNNGG 2 cut(s) 148, 737
BsmAI GTCTC 2 cut(s) 125, 247
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 2 cut(s) 186, 365
Bso31I GGTCTC 2 cut(s) 125, 247
Bsp119I TTCGAA 1 cut(s) 222
Bsp143I GATC 3 cut(s) 99, 191, 427
BspACI CCGC 4 cut(s) 264, 545, 597, 817
BspANI GGCC 2 cut(s) 186, 365
BspCNI CTCAG 2 cut(s) 571, 888
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 110, 185
BspMAI CTGCAG 2 cut(s) 257, 553
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 2 cut(s) 125, 247
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 3 cut(s) 33, 344, 492
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 416, 503
BssMI GATC 3 cut(s) 99, 191, 427
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 664, 715
Bst6I CTCTTC 1 cut(s) 552
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 188, 257
BstDEI CTNAG 2 cut(s) 579, 896
BstENI CCTNNNNNAGG 2 cut(s) 146, 735
BstF5I GGATG 2 cut(s) 457, 529
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 2 cut(s) 264, 904
BstKTI GATC 3 cut(s) 102, 194, 430
BstMAI GTCTC 2 cut(s) 125, 247
BstMBI GATC 3 cut(s) 99, 191, 427
BstMWI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 843, 901, 1013
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 895
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 415, 502
BstSFI CTRYAG 2 cut(s) 253, 549
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 7 cut(s) 16, 73, 271, 399, 535, 858, 964
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 186, 365
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 457, 529
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 88, 293, 485
Cac8I GCNNGC 2 cut(s) 188, 257
CaiI CAGNNNCTG 1 cut(s) 339
CciI TCATGA 1 cut(s) 22
CfoI GCGC 2 cut(s) 264, 904
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 120, 184, 575
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 5 cut(s) 23, 128, 268, 593, 892
DdeI CTNAG 2 cut(s) 579, 896
DpnI GATC 3 cut(s) 101, 193, 429
DpnII GATC 3 cut(s) 99, 191, 427
DrdI GACNNNNNNGTC 2 cut(s) 662, 863
DseDI GACNNNNNNGTC 2 cut(s) 662, 863
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco31I GGTCTC 2 cut(s) 125, 247
Eco47I GGWCC 2 cut(s) 120, 575
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 146, 735
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 5 cut(s) 26, 131, 271, 596, 895
FatI CATG 5 cut(s) 22, 127, 267, 592, 891
FauI CCCGC 1 cut(s) 810
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 9 cut(s) 30, 62, 260, 265, 413, 546, 549, 847, 978
FokI GGATG 2 cut(s) 464, 536
Fsp4HI GCNGC 9 cut(s) 30, 62, 260, 265, 413, 546, 549, 847, 978
FspBI CTAG 3 cut(s) 39, 764, 1004
FspI TGCGCA 1 cut(s) 903
GlaI GCGC 2 cut(s) 263, 903
GluI GCNGC 9 cut(s) 30, 62, 260, 265, 413, 546, 549, 847, 978
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 2 cut(s) 186, 365
HapII CCGG 2 cut(s) 281, 503
HhaI GCGC 2 cut(s) 264, 904
Hin1II CATG 5 cut(s) 26, 131, 271, 596, 895
Hin6I GCGC 2 cut(s) 262, 902
HinP1I GCGC 2 cut(s) 262, 902
HincII GTYRAC 1 cut(s) 825
HindII GTYRAC 1 cut(s) 825
HinfI GANTC 4 cut(s) 11, 19, 368, 644
HpaII CCGG 2 cut(s) 281, 503
HphI GGTGA 2 cut(s) 391, 539
Hpy166II GTNNAC 3 cut(s) 439, 485, 825
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 9 cut(s) 23, 103, 178, 334, 431, 667, 780, 797, 875
Hpy8I GTNNAC 3 cut(s) 439, 485, 825
HpyAV CCTTC 2 cut(s) 566, 946
HpyCH4III ACNGT 2 cut(s) 664, 715
HpyCH4V TGCA 6 cut(s) 173, 255, 291, 470, 551, 694
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 843, 901, 1013
HpyF3I CTNAG 2 cut(s) 579, 896
Hsp92II CATG 5 cut(s) 26, 131, 271, 596, 895
HspAI GCGC 2 cut(s) 262, 902
Kzo9I GATC 3 cut(s) 99, 191, 427
LmnI GCTCC 3 cut(s) 78, 303, 955
Lsp1109I GCAGC 7 cut(s) 16, 73, 271, 399, 535, 858, 964
LweI GCATC 2 cut(s) 382, 505
MaeI CTAG 3 cut(s) 39, 764, 1004
MaeIII GTNAC 3 cut(s) 463, 715, 991
MalI GATC 3 cut(s) 101, 193, 429
MboI GATC 3 cut(s) 99, 191, 427
MboII GAAGA 4 cut(s) 98, 109, 569, 629
MluCI AATT 4 cut(s) 217, 733, 925, 1011
MlyI GAGTC 3 cut(s) 20, 377, 653
MmeI TCCRAC 2 cut(s) 429, 728
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 862
MspI CCGG 2 cut(s) 281, 503
MspR9I CCNGG 2 cut(s) 417, 504
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 843, 901, 1013
NciI CCSGG 1 cut(s) 504
NdeII GATC 3 cut(s) 99, 191, 427
NlaIII CATG 5 cut(s) 26, 131, 271, 596, 895
NlaIV GGNNCC 2 cut(s) 110, 185
NmeAIII GCCGAG 2 cut(s) 391, 963
NmuCI GTSAC 3 cut(s) 463, 715, 991
NsbI TGCGCA 1 cut(s) 903
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 222
PagI TCATGA 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 9 cut(s) 31, 63, 261, 266, 414, 547, 550, 848, 979
PleI GAGTC 3 cut(s) 19, 376, 652
PpsI GAGTC 3 cut(s) 19, 376, 652
PpuMI RGGWCCY 1 cut(s) 575
PshAI GACNNNNGTC 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 110, 185
PspPI GGNCC 3 cut(s) 120, 184, 575
PspPPI RGGWCCY 1 cut(s) 575
PstI CTGCAG 2 cut(s) 257, 553
PstNI CAGNNNCTG 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 862
RseI CAYNNNNRTG 1 cut(s) 597
SalI GTCGAC 1 cut(s) 823
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 9 cut(s) 30, 62, 260, 265, 413, 546, 549, 847, 978
Sau3AI GATC 3 cut(s) 99, 191, 427
Sau96I GGNCC 3 cut(s) 120, 184, 575
SchI GAGTC 3 cut(s) 20, 377, 653
ScrFI CCNGG 2 cut(s) 417, 504
SetI ASST 9 cut(s) 31, 46, 55, 137, 438, 580, 864, 916, 993
SfaNI GCATC 2 cut(s) 382, 505
SfcI CTRYAG 2 cut(s) 253, 549
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 120, 575
SmiMI CAYNNNNRTG 1 cut(s) 597
Sse9I AATT 4 cut(s) 217, 733, 925, 1011
SsiI CCGC 4 cut(s) 264, 545, 597, 817
SspI AATATT 1 cut(s) 790
SspMI CTAG 3 cut(s) 39, 764, 1004
StyD4I CCNGG 2 cut(s) 415, 502
TaaI ACNGT 2 cut(s) 664, 715
TaqI TCGA 4 cut(s) 115, 222, 824, 855
TasI AATT 4 cut(s) 217, 733, 925, 1011
TauI GCSGC 2 cut(s) 267, 548
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 3 cut(s) 88, 293, 492
TseFI GTSAC 3 cut(s) 463, 715, 991
TseI GCWGC 7 cut(s) 29, 61, 259, 412, 548, 846, 977
Tsp45I GTSAC 3 cut(s) 463, 715, 991
TspDTI ATGAA 3 cut(s) 32, 39, 846
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 3 cut(s) 88, 293, 492
VpaK11BI GGWCC 2 cut(s) 120, 575
XagI CCTNNNNNAGG 2 cut(s) 146, 735
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 824
XspI CTAG 3 cut(s) 39, 764, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.