pycom06g12470

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
17580907 .. 17581107
201 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGGCAGCCTTTTCATACCAAAATCCCCACCACCCTTCTCTCCTTGACTCAATTTTCTTGCCCAACTCTCCTACTACCAATAACATCAACACTGACAGTAACTTCTCTCAATCTTTTTACCCATCTGAGCCTTTAACCCAGGAAATTCAAGCTGATAATAATTCAAGAGCCGTTGAAAGCAGCTGCACTATGGATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

4.37

Isoelectric Point (pI)

76.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 144
AgsI TTSAA 3 cut(s) 149, 165, 176
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 152, 183
AluI AGCT 2 cut(s) 152, 183
ApeKI GCWGC 3 cut(s) 5, 180, 183
ApoI RAATTY 1 cut(s) 144
BbvI GCAGC 3 cut(s) 17, 170, 192
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 140
BisI GCNGC 3 cut(s) 6, 181, 184
BlsI GCNGC 3 cut(s) 7, 182, 185
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 17, 170, 192
BsgI GTGCAG 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 196
Bsp143I GATC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 118
BspDI ATCGAT 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 17, 170, 192
Bsu15I ATCGAT 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 196
CviJI RGCY 5 cut(s) 8, 130, 152, 170, 183
CviKI_1 RGCY 5 cut(s) 8, 130, 152, 170, 183
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 138
FaiI YATR 2 cut(s) 16, 191
Fnu4HI GCNGC 3 cut(s) 6, 181, 184
Fsp4HI GCNGC 3 cut(s) 6, 181, 184
GluI GCNGC 3 cut(s) 6, 181, 184
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 125, 152
Lsp1109I GCAGC 3 cut(s) 17, 170, 192
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MluCI AATT 3 cut(s) 51, 144, 160
MlyI GAGTC 1 cut(s) 41
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NdeII GATC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 7, 182, 185
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 6, 181, 184
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 140
SetI ASST 2 cut(s) 154, 185
SgeI CNNG 6 cut(s) 56, 70, 151, 152, 161, 177
Sse9I AATT 3 cut(s) 51, 144, 160
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 51, 144, 160
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 97
TseI GCWGC 3 cut(s) 5, 180, 183
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.