pycom06g12770

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
17882264 .. 17882539
276 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGCTCTCTATGCAAAGTACAGGAATAACAAAACAAATGTGGAGGAGAAGCTACCAGAACAGAAAGCTGATGTTGTGAAGCAAATGACAATTTTGACTACTACTCCTGAGGTGGAGGTACAAGTCCAAGCAGCGGTAAGCTCCCATGACAATAGTACTGATGCTCATCCAAGCTCTGAGCATAACAATGACCAATATATGCATGCACAAACATGCCATAACGAGAAAATCATCGAACCCTCCTTGCCCGGCCAACTTGTTACATGTGAAGTTTGA

Protein Analysis

92

Amino Acids

10.21

Weight (kDa)

5.18

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 3 cut(s) 20, 120, 157
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 263
AluBI AGCT 4 cut(s) 52, 68, 141, 174
AluI AGCT 4 cut(s) 52, 68, 141, 174
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 108
BbvI GCAGC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 249
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 165
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 99, 168
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 1 cut(s) 252
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 2 cut(s) 100, 169
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 108, 177
BstF5I GGATG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 3 cut(s) 206, 216, 267
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 143
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 204
Csp6I GTAC 3 cut(s) 19, 119, 156
CviAII CATG 4 cut(s) 146, 203, 213, 264
CviJI RGCY 6 cut(s) 5, 52, 68, 141, 174, 252
CviKI_1 RGCY 6 cut(s) 5, 52, 68, 141, 174, 252
CviQI GTAC 3 cut(s) 19, 119, 156
DdeI CTNAG 2 cut(s) 108, 177
EaeI YGGCCR 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 204
FaeI CATG 4 cut(s) 149, 206, 216, 267
FaiI YATR 9 cut(s) 12, 147, 183, 198, 200, 204, 214, 219, 265
FatI CATG 4 cut(s) 145, 202, 212, 263
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 249
Hin1II CATG 4 cut(s) 149, 206, 216, 267
HpaII CCGG 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 14, 202, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 108, 177
Hsp92II CATG 4 cut(s) 149, 206, 216, 267
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 7, 69, 120, 262
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 259
MluCI AATT 1 cut(s) 90
MnlI CCTC 4 cut(s) 37, 103, 109, 250
Mph1103I ATGCAT 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 186, 211
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 249
NlaIII CATG 4 cut(s) 149, 206, 216, 267
NsiI ATGCAT 1 cut(s) 204
NspI RCATGY 3 cut(s) 206, 216, 267
PaeI GCATGC 1 cut(s) 206
PciI ACATGT 1 cut(s) 263
PkrI GCNGC 1 cut(s) 133
PscI ACATGT 1 cut(s) 263
RsaI GTAC 3 cut(s) 20, 120, 157
RsaNI GTAC 3 cut(s) 19, 119, 156
RseI CAYNNNNRTG 2 cut(s) 186, 211
SatI GCNGC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 54, 70, 114, 120, 143, 176
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 186, 211
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 247
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 90
TatI WGTACW 2 cut(s) 18, 155
TseI GCWGC 1 cut(s) 131
XceI RCATGY 3 cut(s) 206, 216, 267
ZrmI AGTACT 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.