pycom06g13150

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
18207921 .. 18208530
610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGAGGCGGCGACGCCGCAAATAAAAAGGCTCAGAAGCTCCCGGAGATCGACCACCGCCGCGAAGTCGGATTTCTTCGACGGCTTGCCCGACGATCTCGTCGTATTCATCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCGCCGTCCGATCTCATCAGCGTCCTCATCACGTGTAAGAGATTGAACCGGTTAGGACTCTACTCCCTGGTGTTATCAAAAGCCGGTCCAAAAGCATTCGCAATCCGGGCCAAAAACTGGTCCGATTCGGCTCACCGGTTTCTCAAACAGTGCGTCAGCGCCGGTAACGTTGAAGCCTCCTACACTCTCGGAATGATCCAATTTTACTGTTTACAAAACCGAGCAAGCGGAGCCTCGCTTATGGCAAAAGCCGCCATGATCGATCCCACGCGCCGGCGCTGTACTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1 zf-MYND

Protein Analysis

143

Amino Acids

15.57

Weight (kDa)

10.17

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 86 - 131 1.1e-09 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 255
AccII CGCG 2 cut(s) 62, 409
AciI CCGC 7 cut(s) 8, 17, 57, 60, 132, 366, 390
AclI AACGTT 1 cut(s) 306
AclWI GGATC 2 cut(s) 328, 395
AcvI CACGTG 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 255, 411
AflIII ACRYGT 1 cut(s) 170
AgeI ACCGGT 2 cut(s) 186, 273
AgsI TTSAA 2 cut(s) 184, 311
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 39, 121, 126
AluI AGCT 3 cut(s) 39, 121, 126
AlwI GGATC 2 cut(s) 328, 395
AoxI GGCC 1 cut(s) 246
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 2 cut(s) 186, 273
AspLEI GCGC 3 cut(s) 299, 411, 417
AspS9I GGNCC 3 cut(s) 224, 246, 258
AsuC2I CCSGG 2 cut(s) 43, 245
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 2 cut(s) 224, 258
BbrPI CACGTG 1 cut(s) 171
BceAI ACGGC 2 cut(s) 97, 127
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 43, 245
BfaI CTAG 1 cut(s) 427
BfoI RGCGCY 2 cut(s) 300, 418
BisI GCNGC 4 cut(s) 9, 17, 60, 390
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 4 cut(s) 10, 18, 61, 391
Bme1390I CCNGG 3 cut(s) 43, 206, 245
Bme18I GGWCC 2 cut(s) 224, 258
BmgT120I GGNCC 3 cut(s) 224, 246, 258
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 3 cut(s) 43, 206, 245
Bpu1102I GCTNAGC 1 cut(s) 122
BpuMI CCSGG 2 cut(s) 43, 245
Bsa29I ATCGAT 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 2 cut(s) 186, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 411
Bse118I RCCGGY 5 cut(s) 186, 221, 273, 299, 411
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 255, 411
BseMII CTCAG 2 cut(s) 46, 136
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 62, 409
BshFI GGCC 1 cut(s) 248
BshTI ACCGGT 2 cut(s) 186, 273
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 7 cut(s) 43, 187, 222, 244, 274, 300, 412
BslI CCNNNNNNNGG 2 cut(s) 255, 411
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 6 cut(s) 47, 94, 148, 333, 396, 400
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 7 cut(s) 8, 17, 57, 60, 132, 366, 390
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 45, 135
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 2 cut(s) 62, 409
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 2 cut(s) 328, 395
BsrFI RCCGGY 5 cut(s) 186, 221, 273, 299, 411
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 5 cut(s) 186, 221, 273, 299, 411
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 6 cut(s) 47, 94, 148, 333, 396, 400
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 288, 347
BstACI GRCGYC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 86, 119, 364, 413
BstDEI CTNAG 2 cut(s) 32, 122
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 62, 409
BstH2I RGCGCY 2 cut(s) 300, 418
BstHHI GCGC 3 cut(s) 299, 411, 417
BstKTI GATC 6 cut(s) 50, 97, 151, 336, 399, 403
BstMBI GATC 6 cut(s) 47, 94, 148, 333, 396, 400
BstMWI GCNNNNNNNGC 5 cut(s) 123, 245, 368, 389, 423
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 41, 204, 243
BstUI CGCG 2 cut(s) 62, 409
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 248
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 4 cut(s) 86, 119, 364, 413
CfoI GCGC 3 cut(s) 299, 411, 417
Cfr10I RCCGGY 5 cut(s) 186, 221, 273, 299, 411
Cfr13I GGNCC 3 cut(s) 224, 246, 258
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 3 cut(s) 22, 148, 280
Csp6I GTAC 1 cut(s) 420
CspAI ACCGGT 2 cut(s) 186, 273
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 32, 122
DpnI GATC 6 cut(s) 49, 96, 150, 335, 398, 402
DpnII GATC 6 cut(s) 47, 94, 148, 333, 396, 400
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 224, 258
Eco72I CACGTG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 397
FaiI YATR 2 cut(s) 380, 395
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 9, 17, 60, 390
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 9, 17, 60, 390
FspBI CTAG 1 cut(s) 427
GlaI GCGC 3 cut(s) 298, 410, 416
GluI GCNGC 4 cut(s) 9, 17, 60, 390
HaeII RGCGCY 2 cut(s) 300, 418
HaeIII GGCC 1 cut(s) 248
HapII CCGG 7 cut(s) 43, 187, 222, 244, 274, 300, 412
HgaI GACGC 3 cut(s) 22, 148, 280
HhaI GCGC 3 cut(s) 299, 411, 417
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 3 cut(s) 297, 409, 415
HinP1I GCGC 3 cut(s) 297, 409, 415
HinfI GANTC 2 cut(s) 195, 263
HpaII CCGG 7 cut(s) 43, 187, 222, 244, 274, 300, 412
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 5 cut(s) 35, 70, 148, 262, 329
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 4 cut(s) 16, 83, 95, 104
HpyCH4III ACNGT 2 cut(s) 288, 347
HpyCH4IV ACGT 2 cut(s) 170, 306
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 245, 368, 389, 423
HpyF3I CTNAG 2 cut(s) 32, 122
HpySE526I ACGT 2 cut(s) 170, 306
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 3 cut(s) 297, 409, 415
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
Kzo9I GATC 6 cut(s) 47, 94, 148, 333, 396, 400
LmnI GCTCC 3 cut(s) 44, 131, 368
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 170, 306
MaeIII GTNAC 1 cut(s) 302
MalI GATC 6 cut(s) 49, 96, 150, 335, 398, 402
MboI GATC 6 cut(s) 47, 94, 148, 333, 396, 400
MboII GAAGA 1 cut(s) 67
MluCI AATT 1 cut(s) 338
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 6 cut(s) 122, 139, 148, 173, 325, 382
MreI CGCCGGCG 1 cut(s) 411
MroNI GCCGGC 1 cut(s) 411
MspI CCGG 7 cut(s) 43, 187, 222, 244, 274, 300, 412
MspR9I CCNGG 3 cut(s) 43, 206, 245
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 62, 409
MwoI GCNNNNNNNGC 5 cut(s) 123, 245, 368, 389, 423
NaeI GCCGGC 1 cut(s) 413
NciI CCSGG 2 cut(s) 43, 245
NdeII GATC 6 cut(s) 47, 94, 148, 333, 396, 400
NgoMIV GCCGGC 1 cut(s) 411
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 99
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 2 cut(s) 186, 273
PkrI GCNGC 4 cut(s) 10, 18, 61, 391
PleI GAGTC 1 cut(s) 189
PmaCI CACGTG 1 cut(s) 171
PmlI CACGTG 1 cut(s) 171
PpsI GAGTC 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 204
PspCI CACGTG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 224, 246, 258
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SatI GCNGC 4 cut(s) 9, 17, 60, 390
Sau3AI GATC 6 cut(s) 47, 94, 148, 333, 396, 400
Sau96I GGNCC 3 cut(s) 224, 246, 258
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 3 cut(s) 43, 206, 245
SetI ASST 5 cut(s) 41, 123, 128, 173, 309
SgrAI CRCCGGYG 1 cut(s) 411
SinI GGWCC 2 cut(s) 224, 258
Sse9I AATT 1 cut(s) 338
SsiI CCGC 7 cut(s) 8, 17, 57, 60, 132, 366, 390
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 41, 204, 243
TaaI ACNGT 2 cut(s) 288, 347
TaiI ACGT 2 cut(s) 173, 309
TaqI TCGA 3 cut(s) 50, 78, 399
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 419
TauI GCSGC 4 cut(s) 11, 19, 62, 392
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 97
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 224, 258
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.