Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18765522 .. 18766443

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAGCTGGCAGGAGGAGCTGCCCAGCAATTCAGTTTTCCTCGGTTATTATTGAGCTTGCTTTGGCAAATGTAGTGCAGAAGTTCGATCGGAAACTGCCAACATCAGCTGAAGATTTAGATATGGCTTGCGTAAAGGATCTCCTCTTGAACTCCATCGCTGTTCCACATCGATCGTCAGCTTGCAAGGGTTTGCATACATTGGGCGTGCAGATCATATGGAGGCCTTGGCTACTCTTGTGGGTGTCCAGTTGGTGCAGCAGCTCTCTCAACAAATCCTGGATTTTGTTTCAAGGTCGATTATTTAAAGGTGGTCATACTGCTCCAGCAAAGTGGGCGATGGCTGAGCTTATAAGGAATCCAAGGGTCATTGACAAGTCACAGAGTGAGGGGAGGGGTATGGTTGCAAGCAAAACAGATAGAGAGGATGATTTGGTCGAAATGCGCTACTTGAAGGCGGTGATCAAGGAAACTCTTCAATTACACCCTCAAGTTCCGCTACTGATTCCCAGGCTGTCGACCAGCGATGTGAAAATACATGGTTGCAACATTAAAGCCAAGACACAAGTACTGGTCAATGTATGGCAGACTGCAAGAGATCCCAAGCGTACTAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

207

Amino Acids

23.1

Weight (kDa)

9.89

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	110 - 202	1.8e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	2 cut(s)	458, 497
AclWI	GGATC	2 cut(s)	147, 593
AcuI	CTGAAG	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	570, 610
AgsI	TTSAA	4 cut(s)	151, 293, 454, 479
AjnI	CCWGG	2 cut(s)	278, 509
AluBI	AGCT	7 cut(s)	8, 21, 58, 110, 182, 264, 349
AluI	AGCT	7 cut(s)	8, 21, 58, 110, 182, 264, 349
AlwI	GGATC	2 cut(s)	147, 593
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	3 cut(s)	21, 258, 261
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	8, 270, 273
BccI	CCATC	2 cut(s)	164, 334
BciT130I	CCWGG	2 cut(s)	280, 511
BclI	TGATCA	1 cut(s)	462
BisI	GCNGC	3 cut(s)	22, 259, 262
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	23, 260, 263
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	280, 511
BmrFI	CCNGG	2 cut(s)	280, 511
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	172
BsaJI	CCNNGG	4 cut(s)	42, 227, 362, 509
Bse1I	ACTGG	2 cut(s)	249, 576
BseBI	CCWGG	2 cut(s)	280, 511
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	4 cut(s)	42, 227, 362, 509
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	249, 576
BseRI	GAGGAG	2 cut(s)	31, 134
BseXI	GCAGC	3 cut(s)	8, 270, 273
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	3 cut(s)	98, 230, 277
Bsh1285I	CGRYCG	2 cut(s)	91, 176
BshFI	GGCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	172
BsiEI	CGRYCG	2 cut(s)	91, 176
BsnI	GGCC	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	2 cut(s)	458, 497
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	172
BspPI	GGATC	2 cut(s)	147, 593
BsrI	ACTGG	2 cut(s)	249, 576
BssECI	CCNNGG	4 cut(s)	42, 227, 362, 509
BssMI	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
BssT1I	CCWWGG	2 cut(s)	227, 362
Bst2UI	CCWGG	2 cut(s)	280, 511
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	6 cut(s)	10, 60, 130, 184, 209, 409
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	6 cut(s)	91, 142, 176, 216, 465, 601
BstMBI	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
BstMCI	CGRYCG	2 cut(s)	91, 176
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 335
BstNI	CCWGG	2 cut(s)	280, 511
BstSCI	CCNGG	2 cut(s)	278, 509
BstV1I	GCAGC	3 cut(s)	8, 270, 273
BstX2I	RGATCY	2 cut(s)	139, 598
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstYI	RGATCY	2 cut(s)	139, 598
Bsu15I	ATCGAT	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	226
BsuTUI	ATCGAT	1 cut(s)	172
BtgZI	GCGATG	3 cut(s)	142, 353, 540
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	6 cut(s)	10, 60, 130, 184, 209, 409
CfoI	GCGC	1 cut(s)	447
ClaI	ATCGAT	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	569, 609
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	2 cut(s)	569, 609
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	6 cut(s)	90, 141, 175, 215, 464, 600
DpnII	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
DraI	TTTAAA	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	227, 362
Eco147I	AGGCCT	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	278, 509
EcoT14I	CCWWGG	2 cut(s)	227, 362
ErhI	CCWWGG	2 cut(s)	227, 362
FaeI	CATG	1 cut(s)	542
FaiI	YATR	9 cut(s)	125, 198, 218, 220, 318, 353, 401, 540, 583
FatI	CATG	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	22, 259, 262
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	22, 259, 262
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	22, 259, 262
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	358, 505
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	1 cut(s)	448
HpyCH4V	TGCA	8 cut(s)	79, 186, 196, 211, 258, 407, 546, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 335
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
LmnI	GCTCC	3 cut(s)	5, 18, 328
LpnPI	CCDG	9 cut(s)	39, 262, 265, 292, 339, 496, 523, 535, 557
Lsp1109I	GCAGC	3 cut(s)	8, 270, 273
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	6 cut(s)	90, 141, 175, 215, 464, 600
MboI	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
MboII	GAAGA	2 cut(s)	125, 467
MflI	RGATCY	2 cut(s)	139, 598
MluCI	AATT	2 cut(s)	30, 479
MnlI	CCTC	8 cut(s)	9, 52, 155, 216, 382, 387, 418, 498
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	306, 552
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	280, 511
MvaI	CCWGG	2 cut(s)	280, 511
MwoI	GCNNNNNNNGC	2 cut(s)	18, 335
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
NlaIII	CATG	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	358, 505
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	23, 260, 263
Ple19I	CGATCG	2 cut(s)	91, 176
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	278, 509
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	278, 509
PsuI	RGATCY	2 cut(s)	139, 598
PvuI	CGATCG	2 cut(s)	91, 176
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	570, 610
RsaNI	GTAC	2 cut(s)	569, 609
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	306, 552
SatI	GCNGC	3 cut(s)	22, 259, 262
Sau3AI	GATC	6 cut(s)	88, 139, 173, 213, 462, 598
ScaI	AGTACT	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	280, 511
SetI	ASST	9 cut(s)	10, 23, 60, 112, 184, 266, 298, 313, 351
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	30, 479
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	458, 497
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	278, 509
StyI	CCWWGG	2 cut(s)	227, 362
TaqI	TCGA	5 cut(s)	87, 172, 298, 438, 518
TasI	AATT	2 cut(s)	30, 479
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	358, 505
Tru1I	TTAA	2 cut(s)	306, 552
Tru9I	TTAA	2 cut(s)	306, 552
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	3 cut(s)	21, 258, 261
Tsp45I	GTSAC	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.