pycom06g14180

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
19022489 .. 19023478
990 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGGACAACAACCGCATCGATGATCAAAGTGGTCATCCACCGTCTATTCCGTCTCCTGCGCCGTCCTATCTCGATCCTAAAAGCCTTGAATTGATTCGGACACTCAACCCCGCCGTGATCGAATGGATGAGGAATCTCGACCCTGCCTTTCTCGATGAGATTCGGAAGATTCAGGAATTGAGTTTGAAGGAAAAGGAGGAAAAAGAAGGCAAGGAGAGAGAGACTCAAGAGGAAACTGAGAAGGAGAGACAGAGCGAAAAGAGCGAAAGCGGCAGCGGAGGAGGAGGGAATGAGAACGGTGGTGAGGTGGTGAAGGAGGTTGTTGAGGAGAGTAGCACAAGGAATCACTCTTGGAGAAGGAATGACAAGCTGATGAAGCTGTCCAAGGACAAGGCAATGCAGGGGGAAGAGTTGGCAGAGAAAGACCAGACTGAAAGCAAGGTTATTATCTATCCGAATTCCGAAGTTCTGGTTTTCACAGCAAGTGCTTGGTTTTCATATTTTACGTCAATAAGTTTGTTTTGCTTTGCATATTTGGTTGCAAGTAGTATCTTAACTTTTTGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.42

Weight (kDa)

4.82

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 13, 111, 270, 276
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 457
AgsI TTSAA 2 cut(s) 89, 187
AluBI AGCT 2 cut(s) 370, 379
AluI AGCT 2 cut(s) 370, 379
Alw26I GTCTC 3 cut(s) 57, 215, 241
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 457
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 314, 322
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 2 cut(s) 46, 98
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 57, 215, 241
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
BmsI GCATC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpuEI CTTGAG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 402
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 34, 132
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 294, 297, 341
BseXI GCAGC 1 cut(s) 285
BshVI ATCGAT 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 57, 215, 241
BsmBI CGTCTC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 22, 73, 117
BspACI CCGC 4 cut(s) 13, 111, 270, 276
BspCNI CTCAG 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 18
BspPI GGATC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 22, 73, 117
BssT1I CCWWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 42, 299
Bst6I CTCTTC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 34, 132
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 25, 76, 120
BstMAI GTCTC 3 cut(s) 57, 215, 241
BstMBI GATC 3 cut(s) 22, 73, 117
BstMWI GCNNNNNNNGC 3 cut(s) 261, 270, 376
BstV1I GCAGC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 2 cut(s) 34, 132
CfoI GCGC 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 18
CviJI RGCY 3 cut(s) 84, 370, 379
CviKI_1 RGCY 3 cut(s) 84, 370, 379
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 24, 75, 119
DpnII GATC 3 cut(s) 22, 73, 117
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 4 cut(s) 499, 532, 566, 568
FauI CCCGC 1 cut(s) 118
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 2 cut(s) 21, 139
Fsp4HI GCNGC 2 cut(s) 271, 274
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 271, 274
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 6 cut(s) 94, 133, 160, 169, 223, 343
HphI GGTGA 2 cut(s) 314, 322
Hpy188I TCNGA 4 cut(s) 99, 165, 456, 463
Hpy188III TCNNGA 5 cut(s) 71, 137, 152, 173, 227
HpyAV CCTTC 5 cut(s) 181, 200, 235, 307, 351
HpyCH4III ACNGT 2 cut(s) 42, 299
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 3 cut(s) 400, 530, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 270, 376
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 506
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 73, 117
LpnPI CCDG 6 cut(s) 69, 156, 158, 386, 440, 455
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 24
MaeII ACGT 1 cut(s) 506
MalI GATC 3 cut(s) 24, 75, 119
MboI GATC 3 cut(s) 22, 73, 117
MboII GAAGA 2 cut(s) 178, 419
MluCI AATT 3 cut(s) 89, 176, 457
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 9 cut(s) 123, 190, 223, 272, 275, 278, 298, 310, 319
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 261, 270, 376
NdeII GATC 3 cut(s) 22, 73, 117
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 5 cut(s) 94, 133, 160, 169, 343
PkrI GCNGC 2 cut(s) 272, 275
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 3 cut(s) 22, 73, 117
SchI GAGTC 1 cut(s) 217
SetI ASST 6 cut(s) 309, 321, 372, 381, 444, 509
SfaNI GCATC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 3 cut(s) 89, 176, 457
SsiI CCGC 4 cut(s) 13, 111, 270, 276
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 42, 299
TaiI ACGT 1 cut(s) 509
TaqI TCGA 5 cut(s) 18, 72, 120, 138, 153
TasI AATT 3 cut(s) 89, 176, 457
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 5 cut(s) 94, 133, 160, 169, 343
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 389, 486
TspGWI ACGGA 1 cut(s) 39
XapI RAATTY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.