pycom06g14190

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
19030498 .. 19039404
8907 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1572 bp
ATGAGTATCCGCTTTTCCAAAGAATCAAAACCCACAAACCCAGCAACCCAGTTTCAGCCGCCGTCCCCGCCAGCACAAAAACTACCAATGTTGCCAACGGGTGTTCAGCAACCGGTGTCATTTACAGAGTTGGTCGAAATTTATAGGTACTATCGATCCGGACTGCAATCGGAACTCCTTGAAGGCGTCGCCGTTCCCCTAAATCCCATTAACAACAACCCCGTCGATGATCAAGGTGGTCATCCACAGTCTATTCCGTCTCCTGCGCCGTCCGATCTCGATCCTGAAATAGTTGATTTGATTCGGACACTCGATCCCGCCGTGATCGAATGGATTAGGAATCCCGACCCTGCCTTCCTCGATGAGATTCGGAAGAGTCGGGAATTGAGGTTGAAGGAAAAGGAGGAAAAAGAAGAAGGCAAGGAGAGAGAGACTCAAGAGGAAACTGAGAAGGAGAGAGAGAGCGAAAAGAGCGAAAGCGGCAGCGGGGGAGGAGGGAATGAGAGCGGTGGTGAGGTGGTGAAGGAGGTTGTTGAGGAGAGTAGCACAAGTAAGCGCTCTCGGAGAAGGAAAAACAGGCTGATGAAGCTGTCCAAGGACAAGGCAATGCAGGGGGAAGAGTTGGCAGAGAAGCAAGACCAGACCGAAAGCAAGGAAATGTTTGTTGGTGACTTTGTGTTGAAGGTGTCTAAGGACAAGGCAAAGCCAAGGGAAGAGTTGGCAGAAAAGCAAGACCCGACTGAAAGCAAGGAGGTGTCTAAGGACAAGGCAAAGCAGCGGGAAGAGTTGGTGGAGAAGCAATTCCAGACCGAAAGCAAGAAGAAGGTGTCAAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGCAGTGAAGCAAGACCAGACCGAAAGCAAGAAGATGTCTAAGGAGAAAGCAAAGCAGAGGGAAGAGTTTGCAGAGAACCAAGACCAGACCGAAATCAAGGTGTCTAAGGACAAGGCAAAGCAGACGGAAGAGTTGGCAGAGAAGCAAGACCAGACTGAAAGCAAGAAGAAGCTGTCTAAGGACAAGGCAAAGCAGAAGGAAGAGTTGGCAGAGAGGCAAGACCAGACCGAAAGCAAGATGAAGGTGTCTAAGGACAAGGCAAAGCAAAGGGAAGAGTTGGCAGAGAAGCAAGACCAGACTGAAAGCAAGAAGAAGGTGTCTAAGGACGAGGCAAAGCAGAGGGGAGAGTTGGCAGAGAAGCAAGGCCAGACCAAAAACAAGAAGGTGTTTAAGGACAGTGCAAAGCAGAGGGGAGAGTTGGCAGAGAAGCAAGGCCAGACCAAAAACAAGAAGGTGTTTAAGGACAATGCAAAGCAGAGGGAAGAGTTGGCAGAGAAGCAAGGCCAGACCAAAAACAAGAAGGTGTCTAAGGACAAGGCAAAGCAAAGGGGAGAGTTGGCAGAGAAGCAAGGCCAGACCAAAAACAAGATGGTGTCTACGGACATGGCAAAGCAGAGTGAAGAGTTGACAGAGAAGCAAGACCAGACCGGAAGCAAGATTATTATCTGTCCGAATATTGCCCAGGACAATGTAAAGGGGAACCCCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

524

Amino Acids

59.55

Weight (kDa)

8.95

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 507
AccI GTMKAC 1 cut(s) 1457
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 8 cut(s) 10, 59, 68, 318, 480, 486, 507, 778
AclWI GGATC 3 cut(s) 150, 275, 308
AcsI RAATTY 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 149
AfeI AGCGCT 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 3 cut(s) 182, 394, 682
AjnI CCWGG 1 cut(s) 1542
AjuI GAANNNNNNNTTGG 4 cut(s) 648, 680, 1049, 1081
AluBI AGCT 2 cut(s) 589, 1033
AluI AGCT 2 cut(s) 589, 1033
Alw26I GTCTC 2 cut(s) 264, 425
AlwI GGATC 3 cut(s) 150, 275, 308
Aor13HI TCCGGA 1 cut(s) 158
Aor51HI AGCGCT 1 cut(s) 557
AoxI GGCC 4 cut(s) 1225, 1294, 1363, 1432
ApeKI GCWGC 2 cut(s) 483, 775
ApoI RAATTY 1 cut(s) 138
AsiGI ACCGGT 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 2 cut(s) 268, 558
AsuHPI GGTGA 3 cut(s) 524, 532, 680
BbvI GCAGC 2 cut(s) 495, 787
BccI CCATC 1 cut(s) 1444
BceAI ACGGC 4 cut(s) 46, 176, 253, 305
BciT130I CCWGG 1 cut(s) 1544
BciVI GTATCC 1 cut(s) 17
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 264, 425
BfmI CTRYAG 1 cut(s) 1568
BfoI RGCGCY 1 cut(s) 559
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 4 cut(s) 59, 481, 484, 776
BlsI GCNGC 4 cut(s) 60, 482, 485, 777
Bme1390I CCNGG 1 cut(s) 1544
BmiI GGNNCC 1 cut(s) 1562
BmrFI CCNGG 1 cut(s) 1544
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpuEI CTTGAG 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 154
BsaBI GATNNNNATC 2 cut(s) 279, 1523
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 594, 707, 1542
BsaWI WCCGGW 3 cut(s) 112, 158, 1508
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 2 cut(s) 279, 1523
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 1 cut(s) 1544
BseCI ATCGAT 1 cut(s) 154
BseDI CCNNGG 3 cut(s) 594, 707, 1542
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 2 cut(s) 279, 1523
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 507, 551
BseXI GCAGC 2 cut(s) 495, 787
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 4 cut(s) 1227, 1296, 1365, 1434
BshTI ACCGGT 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 154
BsiSI CCGG 3 cut(s) 113, 159, 1509
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 264, 425
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 4 cut(s) 1227, 1296, 1365, 1434
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 6 cut(s) 155, 229, 274, 280, 313, 324
BspACI CCGC 8 cut(s) 10, 59, 68, 318, 480, 486, 507, 778
BspANI GGCC 4 cut(s) 1227, 1296, 1365, 1434
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 1562
BspPI GGATC 3 cut(s) 150, 275, 308
BsrBI CCGCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 3 cut(s) 594, 707, 1542
BssMI GATC 6 cut(s) 155, 229, 274, 280, 313, 324
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 594, 707
Bst2UI CCWGG 1 cut(s) 1544
Bst4CI ACNGT 2 cut(s) 249, 1259
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 9 cut(s) 447, 690, 759, 900, 966, 1038, 1110, 1182, 1389
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 559
BstHHI GCGC 2 cut(s) 268, 558
BstKTI GATC 6 cut(s) 158, 232, 277, 283, 316, 327
BstMAI GTCTC 2 cut(s) 264, 425
BstMBI GATC 6 cut(s) 155, 229, 274, 280, 313, 324
BstMWI GCNNNNNNNGC 4 cut(s) 67, 471, 480, 586
BstNI CCWGG 1 cut(s) 1544
BstSCI CCNGG 1 cut(s) 1542
BstSFI CTRYAG 1 cut(s) 1568
BstV1I GCAGC 2 cut(s) 495, 787
Bsu15I ATCGAT 1 cut(s) 154
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 4 cut(s) 1227, 1296, 1365, 1434
BsuTUI ATCGAT 1 cut(s) 154
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 870, 1264
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 2 cut(s) 268, 558
Cfr10I RCCGGY 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 1 cut(s) 1465
CviJI RGCY 9 cut(s) 58, 580, 589, 706, 1033, 1227, 1296, 1365, 1434
CviKI_1 RGCY 9 cut(s) 58, 580, 589, 706, 1033, 1227, 1296, 1365, 1434
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 9 cut(s) 447, 690, 759, 900, 966, 1038, 1110, 1182, 1389
DpnI GATC 6 cut(s) 157, 231, 276, 282, 315, 326
DpnII GATC 6 cut(s) 155, 229, 274, 280, 313, 324
Eco130I CCWWGG 2 cut(s) 594, 707
Eco47III AGCGCT 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 1542
EcoT14I CCWWGG 2 cut(s) 594, 707
ErhI CCWWGG 2 cut(s) 594, 707
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 1 cut(s) 1468
FaiI YATR 2 cut(s) 144, 1466
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 1464
FauI CCCGC 4 cut(s) 75, 325, 479, 771
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 1457
Fnu4HI GCNGC 4 cut(s) 59, 481, 484, 776
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 4 cut(s) 59, 481, 484, 776
GlaI GCGC 2 cut(s) 267, 557
GluI GCNGC 4 cut(s) 59, 481, 484, 776
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 559
HaeIII GGCC 4 cut(s) 1227, 1296, 1365, 1434
HapII CCGG 3 cut(s) 113, 159, 1509
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 268, 558
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 1468
Hin6I GCGC 2 cut(s) 266, 556
HinP1I GCGC 2 cut(s) 266, 556
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HinfI GANTC 6 cut(s) 23, 301, 340, 367, 376, 433
HpaII CCGG 3 cut(s) 113, 159, 1509
HphI GGTGA 3 cut(s) 524, 532, 680
Hpy166II GTNNAC 2 cut(s) 1458, 1488
Hpy188I TCNGA 6 cut(s) 172, 274, 306, 372, 564, 1533
Hpy188III TCNNGA 7 cut(s) 159, 278, 284, 344, 380, 437, 805
Hpy8I GTNNAC 2 cut(s) 1458, 1488
Hpy99I CGWCG 2 cut(s) 191, 227
HpyCH4III ACNGT 2 cut(s) 249, 1259
HpyCH4V TGCA 5 cut(s) 166, 610, 932, 1262, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 471, 480, 586
HpyF3I CTNAG 9 cut(s) 447, 690, 759, 900, 966, 1038, 1110, 1182, 1389
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 1468
HspAI GCGC 2 cut(s) 266, 556
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 6 cut(s) 155, 229, 274, 280, 313, 324
Lsp1109I GCAGC 2 cut(s) 495, 787
MaeIII GTNAC 1 cut(s) 668
MalI GATC 6 cut(s) 157, 231, 276, 282, 315, 326
MbiI CCGCTC 1 cut(s) 507
MboI GATC 6 cut(s) 155, 229, 274, 280, 313, 324
MluCI AATT 3 cut(s) 138, 383, 800
MlyI GAGTC 2 cut(s) 385, 427
MroI TCCGGA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 3 cut(s) 210, 1251, 1320
MspA1I CMGCKG 2 cut(s) 486, 778
MspI CCGG 3 cut(s) 113, 159, 1509
MspR9I CCNGG 1 cut(s) 1544
MvaI CCWGG 1 cut(s) 1544
MwoI GCNNNNNNNGC 4 cut(s) 67, 471, 480, 586
NdeII GATC 6 cut(s) 155, 229, 274, 280, 313, 324
NlaIII CATG 1 cut(s) 1468
NlaIV GGNNCC 1 cut(s) 1562
NmuCI GTSAC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 4 cut(s) 23, 301, 340, 367
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 4 cut(s) 60, 482, 485, 777
PleI GAGTC 2 cut(s) 384, 427
PpsI GAGTC 2 cut(s) 384, 427
Psp6I CCWGG 1 cut(s) 1542
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 1542
PspN4I GGNNCC 1 cut(s) 1562
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 3 cut(s) 210, 1251, 1320
SatI GCNGC 4 cut(s) 59, 481, 484, 776
Sau3AI GATC 6 cut(s) 155, 229, 274, 280, 313, 324
SchI GAGTC 2 cut(s) 385, 427
ScrFI CCNGG 1 cut(s) 1544
SfcI CTRYAG 1 cut(s) 1568
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
Sse9I AATT 3 cut(s) 138, 383, 800
SsiI CCGC 8 cut(s) 10, 59, 68, 318, 480, 486, 507, 778
SspI AATATT 1 cut(s) 1537
StyD4I CCNGG 1 cut(s) 1542
StyI CCWWGG 2 cut(s) 594, 707
TaaI ACNGT 2 cut(s) 249, 1259
TaqI TCGA 7 cut(s) 135, 154, 225, 279, 312, 327, 360
TaqII GACCGA 5 cut(s) 659, 824, 896, 965, 1103
TasI AATT 3 cut(s) 138, 383, 800
TauI GCSGC 2 cut(s) 61, 483
TfiI GAWTC 4 cut(s) 23, 301, 340, 367
Tru1I TTAA 3 cut(s) 210, 1251, 1320
Tru9I TTAA 3 cut(s) 210, 1251, 1320
TscAI CASTG 2 cut(s) 870, 1264
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 2 cut(s) 483, 775
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 2 cut(s) 599, 1115
TspGWI ACGGA 3 cut(s) 246, 1001, 1475
TspRI CASTG 2 cut(s) 870, 1264
XapI RAATTY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 1447
XmiI GTMKAC 1 cut(s) 1457
XmnI GAANNNNTTC 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.