pycom06g14330

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
19111382 .. 19113561
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1416 bp
ATGTTAAAAATTGCCAGCCAGAATGTGGAGGTTTTGTCGTCATCACCGAAATCCCCTACATCTTTTCTGTCTGAACACCATGTAAAAGCCCCTGCTAGTGGGAAGGCACCAACAGCTGGGATAGCTGCGAGGCATGTACGCCGGTCACACTCAGGGAAGTTGGTGCGAGTAAAGAAGGAGGGAGGCGGTGGTAAGGGCACGTGGGGAAAACTGCTTGACACTGATGGCGAAGCCACTCTTGATCGCAATGACCCTAACTATGACAGTGGCGAGGAACCATATCAACTTGTTGAGTCAACTGTCATAGATCCCTTGGATGAATACAAGAAAGCTGTCGTTTCCATCATTGAGGAATACTTCAGCACTGGTGATGTGGCAGTGGCACCATCTGACCTCAAAGAACTAGGCTCAAGTCAATATCATTCTTACTTCATTAAGCGACTTGTTTCCATTGCCTTGGATAGGCATGATAAGGAGAAAGAAATGGCTTCGGTTTTGCTTTCATCTTTGTATGCTGATGTCATTAGTCCTCCCCAGATTAAAGATGGATTTTTCATCCTTCTTGAATCTACTGATGACCTTGCAGTGGACATACCGGATGCAGTAGACATCCTTGCTTTGTTTCTTGCTCGTGCAGTGGTTGATGACATCCTTCCCCCGGCCTTCTGCACCAGGGCAAAGAAGGCACTCCCAGAATCTTCAAAGGGCGTTCAAGTAATCCAGACTGCTGAGAAGAGCTACCTTTCAGCTCCACACCATGCAGAACTTGTGGAAAGGAGGTGGGGTGGTAGCACCCACATTACTGTTGAAGAGGTGAAGAAAAAAATTGCTGGTCTACTGAGGGAATACGTGGAAAGTGGAGACACTTCTGAGGCTTGTAGGTGCATAAGGGAGTTAGGTGTTCCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGGTTCTTGCCATGGAGATTCAAACAGCAGAACCGCTAGTAATTAAGCTGTTAAAGGATGCAGCTGAAGAAGGCCTGATTAGTTCTAGTCAAATGGTAAAGGGCTTTTCTCGATTGGTGGAGAGCCTTGACGACCTTGCTCTTGACATTCCGTCAGCAGTCAGCTTGTTCCAGTCCCTGGTACTCGAGGCGACAGATGGAGGTTGGCTTGATGCTTCCTTTTTGAAATCATCGAATGAAGATGGTGATGCACAAGTTGAAGATGAAAAAGTGAGGCGGTACAAGAAAGAGATTGTGCCCATAATCCATGAATATTTTCTCTCAGATGATATCCCAGAACTGATCCGGAGCCTTGAAGATCTTGGGGTACCTCAATATAATCCACTATTCTTGAAGAAGCTGATCACCCTTGCAATGGATCGCAAGAACCGTGAAAAGGAAATGGCATCTGTTTTGCTTTCTGCCCTTCACATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

472

Amino Acids

51.81

Weight (kDa)

5.27

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 109 - 219 2.4e-25 MA3 domain
MA3 PF02847 272 - 383 4.8e-30 MA3 domain
MA3 PF02847 407 - 468 2.6e-13 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1303
AccB1I GGYRCC 3 cut(s) 106, 382, 1303
AccB7I CCANNNNNTGG 3 cut(s) 25, 116, 1114
AccI GTMKAC 2 cut(s) 606, 835
AccIII TCCGGA 1 cut(s) 1281
AciI CCGC 3 cut(s) 186, 971, 1213
AclWI GGATC 3 cut(s) 302, 1273, 1362
AcuI CTGAAG 2 cut(s) 343, 1023
AcvI CACGTG 1 cut(s) 201
AfaI GTAC 4 cut(s) 138, 1119, 1217, 1305
AfiI CCNNNNNNNGG 9 cut(s) 25, 98, 116, 462, 586, 658, 1114, 1351, 1372
AgsI TTSAA 9 cut(s) 566, 702, 713, 809, 959, 1162, 1196, 1292, 1330
AhdI GACNNNNNGTC 1 cut(s) 1087
AjnI CCWGG 2 cut(s) 671, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 9 cut(s) 116, 125, 332, 738, 749, 985, 1001, 1101, 1336
AluI AGCT 9 cut(s) 116, 125, 332, 738, 749, 985, 1001, 1101, 1336
Alw26I GTCTC 1 cut(s) 855
AlwI GGATC 3 cut(s) 302, 1273, 1362
AlwNI CAGNNNCTG 1 cut(s) 1114
Ama87I CYCGRG 1 cut(s) 1121
Aor13HI TCCGGA 1 cut(s) 1281
AoxI GGCC 2 cut(s) 660, 1009
ApeKI GCWGC 2 cut(s) 125, 998
Asp700I GAANNNNTTC 1 cut(s) 1251
Asp718I GGTACC 1 cut(s) 1303
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 5 cut(s) 36, 380, 826, 1193, 1333
AvaI CYCGRG 1 cut(s) 1121
BaeGI GKGCMC 2 cut(s) 200, 1236
BanI GGYRCC 3 cut(s) 106, 382, 1303
BauI CACGAG 1 cut(s) 630
BbrPI CACGTG 1 cut(s) 201
BbvI GCAGC 2 cut(s) 112, 1010
BccI CCATC 6 cut(s) 218, 350, 394, 539, 1127, 1172
BciT130I CCWGG 2 cut(s) 673, 1115
BclI TGATCA 1 cut(s) 1338
BcnI CCSGG 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 855
BfaI CTAG 4 cut(s) 96, 404, 974, 1023
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 2 cut(s) 126, 999
BlsI GCNGC 2 cut(s) 127, 1000
Bme1390I CCNGG 3 cut(s) 659, 673, 1115
BmeRI GACNNNNNGTC 1 cut(s) 1087
BmeT110I CYCGRG 1 cut(s) 1121
BmiI GGNNCC 5 cut(s) 108, 276, 384, 1286, 1305
BmrFI CCNGG 3 cut(s) 659, 673, 1115
BmsI GCATC 5 cut(s) 589, 985, 1138, 1174, 1391
BpuEI CTTGAG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 659
BsaAI YACGTR 2 cut(s) 201, 850
BsaJI CCNNGG 6 cut(s) 312, 456, 657, 672, 948, 1113
BsaWI WCCGGW 2 cut(s) 595, 1281
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 769, 799
Bsc4I CCNNNNNNNGG 9 cut(s) 25, 98, 116, 462, 586, 658, 1114, 1351, 1372
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 370, 1108
Bse3DI GCAATG 3 cut(s) 253, 450, 1356
BseAI TCCGGA 1 cut(s) 1281
BseBI CCWGG 2 cut(s) 673, 1115
BseDI CCNNGG 6 cut(s) 312, 456, 657, 672, 948, 1113
BseGI GGATG 6 cut(s) 322, 555, 604, 609, 648, 1000
BseLI CCNNNNNNNGG 9 cut(s) 25, 98, 116, 462, 586, 658, 1114, 1351, 1372
BseMI GCAATG 3 cut(s) 253, 450, 1356
BseMII CTCAG 5 cut(s) 165, 720, 830, 861, 1272
BseNI ACTGG 2 cut(s) 370, 1108
BseSI GKGCMC 2 cut(s) 200, 1236
BseXI GCAGC 2 cut(s) 112, 1010
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 2 cut(s) 652, 654
BshFI GGCC 2 cut(s) 662, 1011
BshNI GGYRCC 3 cut(s) 106, 382, 1303
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 4 cut(s) 142, 596, 659, 1282
BslFI GGGAC 1 cut(s) 1096
BslI CCNNNNNNNGG 9 cut(s) 25, 98, 116, 462, 586, 658, 1114, 1351, 1372
BsmAI GTCTC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 1096
BsnI GGCC 2 cut(s) 662, 1011
BsoBI CYCGRG 1 cut(s) 1121
Bsp1286I GDGCHC 2 cut(s) 200, 1236
Bsp13I TCCGGA 1 cut(s) 1281
Bsp143I GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 3 cut(s) 186, 971, 1213
BspANI GGCC 2 cut(s) 662, 1011
BspCNI CTCAG 5 cut(s) 164, 721, 831, 862, 1271
BspEI TCCGGA 1 cut(s) 1281
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 5 cut(s) 108, 276, 384, 1286, 1305
BspPI GGATC 3 cut(s) 302, 1273, 1362
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 3 cut(s) 106, 382, 1303
BsrDI GCAATG 3 cut(s) 253, 450, 1356
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 370, 1108
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 6 cut(s) 312, 456, 657, 672, 948, 1113
BssMI GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 3 cut(s) 312, 456, 948
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 673, 1115
Bst4CI ACNGT 4 cut(s) 266, 301, 805, 1367
Bst6I CTCTTC 3 cut(s) 728, 804, 923
BstBAI YACGTR 2 cut(s) 201, 850
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 5 cut(s) 151, 729, 839, 870, 1258
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 1 cut(s) 460
BstF5I GGATG 6 cut(s) 322, 555, 604, 609, 648, 1000
BstKTI GATC 6 cut(s) 244, 310, 1281, 1297, 1341, 1357
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 683
BstNI CCWGG 2 cut(s) 673, 1115
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 657, 671, 1113
BstSLI GKGCMC 2 cut(s) 200, 1236
BstV1I GCAGC 2 cut(s) 112, 1010
BstX2I RGATCY 2 cut(s) 307, 1294
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 2 cut(s) 307, 1294
BsuRI GGCC 2 cut(s) 662, 1011
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 6 cut(s) 322, 555, 604, 609, 648, 1000
BtsI GCAGTG 3 cut(s) 384, 591, 642
BtsIMutI CAGTG 6 cut(s) 219, 271, 363, 384, 591, 642
Cac8I GCNNGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 1114
CciI TCATGA 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 141
Csp6I GTAC 4 cut(s) 137, 1118, 1216, 1304
CspCI CAANNNNNGTGG 2 cut(s) 1308, 1343
CviAII CATG 7 cut(s) 80, 134, 467, 758, 917, 949, 1244
CviQI GTAC 4 cut(s) 137, 1118, 1216, 1304
DdeI CTNAG 5 cut(s) 151, 729, 839, 870, 1258
DpnI GATC 6 cut(s) 243, 309, 1280, 1296, 1340, 1356
DpnII GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
DriI GACNNNNNGTC 1 cut(s) 1087
Eam1104I CTCTTC 3 cut(s) 728, 804, 923
Eam1105I GACNNNNNGTC 1 cut(s) 1087
EarI CTCTTC 3 cut(s) 728, 804, 923
Eco130I CCWWGG 3 cut(s) 312, 456, 948
Eco147I AGGCCT 1 cut(s) 1011
Eco32I GATATC 1 cut(s) 1267
Eco57I CTGAAG 2 cut(s) 343, 1023
Eco72I CACGTG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 1121
EcoNI CCTNNNNNAGG 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 671, 1113
EcoRV GATATC 1 cut(s) 1267
EcoT14I CCWWGG 3 cut(s) 312, 456, 948
ErhI CCWWGG 3 cut(s) 312, 456, 948
FaeI CATG 7 cut(s) 83, 137, 470, 761, 920, 952, 1247
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 1096
FatI CATG 7 cut(s) 79, 133, 466, 757, 916, 948, 1243
FbaI TGATCA 1 cut(s) 1338
FblI GTMKAC 2 cut(s) 606, 835
Fnu4HI GCNGC 2 cut(s) 126, 999
FokI GGATG 6 cut(s) 329, 542, 596, 611, 635, 1007
Fsp4HI GCNGC 2 cut(s) 126, 999
FspBI CTAG 4 cut(s) 96, 404, 974, 1023
GluI GCNGC 2 cut(s) 126, 999
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 662, 1011
HapII CCGG 4 cut(s) 142, 596, 659, 1282
Hin1II CATG 7 cut(s) 83, 137, 470, 761, 920, 952, 1247
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 4 cut(s) 293, 566, 695, 955
HpaII CCGG 4 cut(s) 142, 596, 659, 1282
HphI GGTGA 5 cut(s) 36, 380, 826, 1193, 1333
Hpy166II GTNNAC 4 cut(s) 297, 589, 607, 836
Hpy188I TCNGA 4 cut(s) 73, 391, 871, 1261
Hpy188III TCNNGA 8 cut(s) 239, 563, 721, 917, 1047, 1079, 1282, 1327
Hpy8I GTNNAC 4 cut(s) 297, 589, 607, 836
HpyAV CCTTC 8 cut(s) 97, 169, 569, 662, 673, 676, 1001, 1412
HpyCH4III ACNGT 4 cut(s) 266, 301, 805, 1367
HpyCH4IV ACGT 2 cut(s) 200, 849
HpyCH4V TGCA 9 cut(s) 584, 602, 635, 669, 761, 885, 998, 1187, 1349
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 683
HpyF3I CTNAG 5 cut(s) 151, 729, 839, 870, 1258
HpySE526I ACGT 2 cut(s) 200, 849
Hsp92II CATG 7 cut(s) 83, 137, 470, 761, 920, 952, 1247
Kpn2I TCCGGA 1 cut(s) 1281
KpnI GGTACC 1 cut(s) 1307
Ksp22I TGATCA 1 cut(s) 1338
Kzo9I GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 2 cut(s) 754, 1284
Lsp1109I GCAGC 2 cut(s) 112, 1010
LweI GCATC 5 cut(s) 589, 985, 1138, 1174, 1391
MaeI CTAG 4 cut(s) 96, 404, 974, 1023
MaeII ACGT 2 cut(s) 200, 849
MaeIII GTNAC 1 cut(s) 144
MalI GATC 6 cut(s) 243, 309, 1280, 1296, 1340, 1356
MboI GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
MflI RGATCY 2 cut(s) 307, 1294
MhlI GDGCHC 2 cut(s) 200, 1236
MluCI AATT 3 cut(s) 9, 825, 978
MlyI GAGTC 1 cut(s) 302
MroI TCCGGA 1 cut(s) 1281
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 5 cut(s) 5, 435, 540, 981, 989
MspA1I CMGCKG 2 cut(s) 116, 1001
MspI CCGG 4 cut(s) 142, 596, 659, 1282
MspR9I CCNGG 3 cut(s) 659, 673, 1115
MvaI CCWGG 2 cut(s) 673, 1115
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 683
NciI CCSGG 1 cut(s) 659
NcoI CCATGG 1 cut(s) 948
NdeII GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
NlaIII CATG 7 cut(s) 83, 137, 470, 761, 920, 952, 1247
NlaIV GGNNCC 5 cut(s) 108, 276, 384, 1286, 1305
NmuCI GTSAC 1 cut(s) 144
NspI RCATGY 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 1121
PagI TCATGA 1 cut(s) 916
PceI AGGCCT 1 cut(s) 1011
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 1363
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 3 cut(s) 566, 695, 955
PflMI CCANNNNNTGG 3 cut(s) 25, 116, 1114
PkrI GCNGC 2 cut(s) 127, 1000
PleI GAGTC 1 cut(s) 301
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 2 cut(s) 201, 850
Psp6I CCWGG 2 cut(s) 671, 1113
PspCI CACGTG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 671, 1113
PspN4I GGNNCC 5 cut(s) 108, 276, 384, 1286, 1305
PspXI VCTCGAGB 1 cut(s) 1121
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 2 cut(s) 307, 1294
PvuII CAGCTG 2 cut(s) 116, 1001
RsaI GTAC 4 cut(s) 138, 1119, 1217, 1305
RsaNI GTAC 4 cut(s) 137, 1118, 1216, 1304
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 5 cut(s) 5, 435, 540, 981, 989
SatI GCNGC 2 cut(s) 126, 999
Sau3AI GATC 6 cut(s) 241, 307, 1278, 1294, 1338, 1354
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 3 cut(s) 659, 673, 1115
SduI GDGCHC 2 cut(s) 200, 1236
SfaNI GCATC 5 cut(s) 589, 985, 1138, 1174, 1391
Sfr274I CTCGAG 1 cut(s) 1121
SlaI CTCGAG 1 cut(s) 1121
SmlI CTYRAG 2 cut(s) 409, 1121
SmoI CTYRAG 2 cut(s) 409, 1121
Sse9I AATT 3 cut(s) 9, 825, 978
SseBI AGGCCT 1 cut(s) 1011
SsiI CCGC 3 cut(s) 186, 971, 1213
SspI AATATT 1 cut(s) 1250
SspMI CTAG 4 cut(s) 96, 404, 974, 1023
StuI AGGCCT 1 cut(s) 1011
StyD4I CCNGG 3 cut(s) 657, 671, 1113
StyI CCWWGG 3 cut(s) 312, 456, 948
TaaI ACNGT 4 cut(s) 266, 301, 805, 1367
TaiI ACGT 2 cut(s) 203, 852
TaqI TCGA 3 cut(s) 1048, 1122, 1169
TasI AATT 3 cut(s) 9, 825, 978
TfiI GAWTC 3 cut(s) 566, 695, 955
Tru1I TTAA 5 cut(s) 5, 435, 540, 981, 989
Tru9I TTAA 5 cut(s) 5, 435, 540, 981, 989
TscAI CASTG 6 cut(s) 226, 271, 370, 384, 591, 642
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 125, 998
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 8 cut(s) 333, 421, 492, 544, 902, 1188, 1215, 1260
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 6 cut(s) 226, 271, 370, 384, 591, 642
Van91I CCANNNNNTGG 3 cut(s) 25, 116, 1114
XagI CCTNNNNNAGG 1 cut(s) 460
XceI RCATGY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 542
XhoI CTCGAG 1 cut(s) 1121
XmiI GTMKAC 2 cut(s) 606, 835
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 4 cut(s) 96, 404, 974, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.