pycom06g14580

ABC transporter E family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
19309120 .. 19309617
498 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGACTAAAACTCAGGGAAACTTCAGGCTTCGTGCGGTTGAAGGTGAATTTACTGATTCTCAGATTATTGTAATGCTGGGAGAGAATGGAACAGGGAAGACAACATTCATCCGTATGCTGGCTGGTCTATTGAAACCTGATTCTGTAGAAGATTCTGATGTGGAGATACCTGAATTCAATGTTTCTTACAAGCCCCAGAAAATCAGTCCAAAGTTTCCATCCACTGTCAGAGCCTTGTTACATTCAAAAATTCGTGATTCATATACTCATCCCCAATTCATGTCAGATGTGATGAAGCCTCTTCTTATTGAACAATTAATGGATCAAGAAGTTCTGAATCTCTCTGGTGGAGAGTTGCAGAGGGTTGCATTATGCCTATGCCTCGGGAAGGTAAATTATTGTTATTCTTGA

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

6.1

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 11 - 128 1.8e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 3 cut(s) 47, 173, 249
AcuI CTGAAG 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 118, 388
AgsI TTSAA 5 cut(s) 41, 133, 178, 246, 311
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 383
ApoI RAATTY 3 cut(s) 47, 173, 249
AseI ATTAAT 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 388
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 3 cut(s) 108, 218, 268
BseLI CCNNNNNNNGG 2 cut(s) 118, 388
BseMII CTCAG 2 cut(s) 26, 74
BseYI CCCAGC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 118, 388
BsoBI CYCGRG 1 cut(s) 383
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 25, 73
BspPI GGATC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 12, 60
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 108, 218, 268
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 104
BtsCI GGATG 3 cut(s) 108, 218, 268
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 120
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 28, 122, 193, 233, 298
CviKI_1 RGCY 5 cut(s) 28, 122, 193, 233, 298
DdeI CTNAG 2 cut(s) 12, 60
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 1 cut(s) 283
FaiI YATR 6 cut(s) 116, 262, 264, 281, 373, 379
FatI CATG 1 cut(s) 279
FokI GGATG 3 cut(s) 95, 205, 255
GsaI CCCAGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 283
HinfI GANTC 5 cut(s) 56, 140, 152, 257, 337
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 5 cut(s) 63, 157, 230, 286, 336
Hpy188III TCNNGA 4 cut(s) 254, 326, 385, 408
HpyAV CCTTC 2 cut(s) 35, 382
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 358, 368
HpyF3I CTNAG 2 cut(s) 12, 60
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 9 cut(s) 10, 62, 78, 104, 108, 150, 183, 209, 330
MaeIII GTNAC 1 cut(s) 237
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 3 cut(s) 109, 161, 293
MluCI AATT 6 cut(s) 47, 173, 249, 275, 314, 394
MnlI CCTC 3 cut(s) 309, 354, 392
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 113
NdeII GATC 1 cut(s) 322
NlaIII CATG 1 cut(s) 283
PfeI GAWTC 5 cut(s) 56, 140, 152, 257, 337
PshBI ATTAAT 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 317
Sau3AI GATC 1 cut(s) 322
SetI ASST 4 cut(s) 46, 139, 172, 393
SfcI CTRYAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 6 cut(s) 47, 173, 249, 275, 314, 394
SsiI CCGC 1 cut(s) 35
TaaI ACNGT 1 cut(s) 226
TasI AATT 6 cut(s) 47, 173, 249, 275, 314, 394
TfiI GAWTC 5 cut(s) 56, 140, 152, 257, 337
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 4 cut(s) 97, 249, 268, 308
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 229
VspI ATTAAT 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 386
XapI RAATTY 3 cut(s) 47, 173, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.