pycom06g15910

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
20377466 .. 20377666
201 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGAGTAGGCTGCAAAGTTTTTGTGGTAACGCATATTACCATGAAGCTGATATGAGGACAGGAAAAGCAACGTATTGGCAGCTTACAAGCCTTCAGGCATTTGGGCCTGGCTTACAGGGAGGGAATCTAAAACTTGTCATATTGCTCTATAATGACTTCAACCTCAGAAAGAGTCTTCTAATCCTGAGATACGAACTATGA

Protein Analysis

67

Amino Acids

7.6

Weight (kDa)

9.3

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 2 cut(s) 47, 82
AluI AGCT 2 cut(s) 47, 82
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 10, 79
AspS9I GGNCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 108
BisI GCNGC 2 cut(s) 11, 80
BlsI GCNGC 2 cut(s) 12, 81
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 176, 178
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 106
BsnI GGCC 1 cut(s) 106
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 177, 177
Bst2UI CCWGG 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 164, 185
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 1 cut(s) 41
CviJI RGCY 6 cut(s) 10, 47, 82, 90, 106, 111
CviKI_1 RGCY 6 cut(s) 10, 47, 82, 90, 106, 111
DdeI CTNAG 2 cut(s) 164, 185
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 44
FaiI YATR 6 cut(s) 34, 42, 53, 140, 150, 199
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 11, 80
Fsp4HI GCNGC 2 cut(s) 11, 80
GluI GCNGC 2 cut(s) 11, 80
HaeIII GGCC 1 cut(s) 106
Hin1II CATG 1 cut(s) 44
HinfI GANTC 2 cut(s) 124, 172
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 164, 185
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 44
LpnPI CCDG 6 cut(s) 45, 80, 93, 101, 120, 197
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 3 cut(s) 48, 113, 173
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 44
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 12, 81
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 104
SatI GCNGC 2 cut(s) 11, 80
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 108
SetI ASST 4 cut(s) 49, 74, 84, 165
SgeI CNNG 9 cut(s) 53, 72, 99, 107, 119, 120, 128, 146, 196
StyD4I CCNGG 1 cut(s) 106
TaiI ACGT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 2 cut(s) 10, 79
TspDTI ATGAA 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.