Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20399008 .. 20400702

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTAAATTCTGTGGACAGTGTGGATGGAGTGATGGAGAATGAGACTACTGAAACGAGCACTTCAGGGTCCAAGTATCTATTTCTCCTGTTTGACGATGCATTTTTGGCTGCACAAAATTATATTTTCACAACTGAGGGGCATCCCCTTCCAGTGTTAAGTAGTTGGCATGAAAGGCCTCCTGAGACCTACATCCATTCCAACTGGACTTCTCTGAAGACCGGAAAGCAAGCGCTGATGTGTGTGCAAGTATGTCCTCCTACAGCAATGAATTCGTGGGAATGTGGCGGAGAACAAGTTGAGAGTGCTTGGCACGTCCCTGATGATTGTAGTGACCACAGATGTTTAACAGACGATGAATGTGGAATTCACTCAACTAATTGTAGACGAAGATGGTGTAGCATGGCCGACTACTGCGGGCTGTGGTTGTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

4.62

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	2 cut(s)	288, 417
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	7, 271, 366
AcuI	CTGAAG	2 cut(s)	48, 236
AfeI	AGCGCT	1 cut(s)	234
AjiI	CACGTC	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	38, 179
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	2 cut(s)	176, 405
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	3 cut(s)	7, 271, 366
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	20, 28, 387
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BcoDI	GTCTC	2 cut(s)	38, 179
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	2 cut(s)	88, 151
BpiI	GAAGAC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse1I	ACTGG	2 cut(s)	152, 209
Bse3DI	GCAATG	1 cut(s)	273
BseGI	GGATG	3 cut(s)	31, 142, 192
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	126, 174
BseNI	ACTGG	2 cut(s)	152, 209
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	178, 407
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	38, 179
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	178, 407
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	288, 417
BspANI	GGCC	2 cut(s)	178, 407
BspCNI	CTCAG	2 cut(s)	127, 175
BspLI	GGNNCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	152, 209
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	231, 419
BstDEI	CTNAG	2 cut(s)	135, 183
BstF5I	GGATG	3 cut(s)	31, 142, 192
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	38, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 175
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	178, 407
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	31, 142, 192
BtsIMutI	CAGTG	2 cut(s)	25, 159
Cac8I	GCNNGC	2 cut(s)	231, 419
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	2 cut(s)	170, 403
CviJI	RGCY	4 cut(s)	110, 178, 407, 421
CviKI_1	RGCY	4 cut(s)	110, 178, 407, 421
DdeI	CTNAG	2 cut(s)	135, 183
EaeI	YGGCCR	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	69
Eco47III	AGCGCT	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	48, 236
EcoRI	GAATTC	2 cut(s)	271, 366
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	2 cut(s)	173, 406
FaiI	YATR	6 cut(s)	123, 171, 253, 404, 434, 436
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	169, 402
FauI	CCCGC	1 cut(s)	410
FauNDI	CATATG	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	3 cut(s)	38, 129, 179
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	178, 407
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	173, 406
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	16, 386
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	16, 386
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	101, 113, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 175
HpyF3I	CTNAG	2 cut(s)	135, 183
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	173, 406
HspAI	GCGC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	51, 101, 165, 190, 195, 235, 333
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	88, 151
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	332
MboII	GAAGA	2 cut(s)	229, 402
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	7, 118, 271, 366, 379
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	130, 189, 267
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	2 cut(s)	158, 347
MspI	CCGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	107, 175
NdeI	CATATG	1 cut(s)	434
NlaIII	CATG	2 cut(s)	173, 406
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	158, 347
SatI	GCNGC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	2 cut(s)	191, 318
SfaNI	GCATC	2 cut(s)	88, 151
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	5 cut(s)	7, 118, 271, 366, 379
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	288, 417
StuI	AGGCCT	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	318
TasI	AATT	5 cut(s)	7, 118, 271, 366, 379
Tru1I	TTAA	2 cut(s)	158, 347
Tru9I	TTAA	2 cut(s)	158, 347
TscAI	CASTG	2 cut(s)	25, 159
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	186, 284, 372, 421
TspRI	CASTG	2 cut(s)	25, 159
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	3 cut(s)	7, 271, 366
XmiI	GTMKAC	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.