Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20433542 .. 20433784

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCAGAGACTGCTGCTAAACAGGTTGAAGAAATTAATTGCATGGGGAATGAAAGTGAAGCTGGATTGACTGTGCCATGGTGCAACCAACAGGAGGTTCTAGCAAACCGATCCGTGGGTTGTTTTGTGACTGACTGCGGATGGAATTCAACGTTGGAGGGGTTGAGCCTAGGCGGCCGATGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

63

Amino Acids

6.78

Weight (kDa)

4.22

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	138, 174
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	94, 115
AgsI	TTSAA	2 cut(s)	29, 150
AjuI	GAANNNNNNNTTGG	4 cut(s)	81, 113, 137, 169
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	145
AseI	ATTAAT	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	169
AvrII	CCTAGG	1 cut(s)	169
BccI	CCATC	2 cut(s)	135, 174
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	2 cut(s)	101, 170
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	15, 175
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	2 cut(s)	16, 176
BsaJI	CCNNGG	3 cut(s)	77, 114, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 115
BseDI	CCNNGG	3 cut(s)	77, 114, 169
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	94, 115
BseX3I	CGGCCG	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	94, 115
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	2 cut(s)	138, 174
BspANI	GGCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	77, 114, 169
BssMI	GATC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	77, 169
Bst4CI	ACNGT	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDSI	CCRYGG	2 cut(s)	77, 114
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	1 cut(s)	110
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 174
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	2 cut(s)	77, 114
BtsCI	GGATG	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	11
CviAII	CATG	2 cut(s)	43, 78
CviJI	RGCY	3 cut(s)	62, 168, 177
CviKI_1	RGCY	3 cut(s)	62, 168, 177
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	77, 169
Eco52I	CGGCCG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	77, 169
ErhI	CCWWGG	2 cut(s)	77, 169
FaeI	CATG	2 cut(s)	46, 81
FaiI	YATR	2 cut(s)	44, 79
FatI	CATG	2 cut(s)	42, 77
Fnu4HI	GCNGC	2 cut(s)	15, 175
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	15, 175
FspBI	CTAG	2 cut(s)	101, 170
GluI	GCNGC	2 cut(s)	15, 175
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	46, 81
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	42, 84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 174
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	46, 81
Kzo9I	GATC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	8, 48, 77
MaeI	CTAG	2 cut(s)	101, 170
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	41
MluCI	AATT	3 cut(s)	33, 37, 145
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	88, 151
MseI	TTAA	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	11, 174
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	46, 81
NmuCI	GTSAC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	16, 176
PshBI	ATTAAT	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	152
PstNI	CAGNNNCTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	15, 175
Sau3AI	GATC	1 cut(s)	110
SetI	ASST	4 cut(s)	27, 64, 99, 155
SgeI	CNNG	8 cut(s)	35, 55, 75, 90, 104, 113, 127, 182
Sse9I	AATT	3 cut(s)	33, 37, 145
SsiI	CCGC	2 cut(s)	138, 174
SspMI	CTAG	2 cut(s)	101, 170
StyI	CCWWGG	2 cut(s)	77, 169
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	155
TasI	AATT	3 cut(s)	33, 37, 145
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	1 cut(s)	145
XmaJI	CCTAGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	101, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.