pycom06g16860

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
20973824 .. 20974191
368 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGAAAGGAACACCCTATGAGTTCCTTGAGCCCCAAGAAATTGTAAGCAAGATTAATGGGCTGCCTGACGGATATGACATCAACTGTGTGCTTGACCCTTCAAGACTTCGAGTCACAAGGCGACAACTAGAGCTGTGGACCGACATACCAGGGCTGCAGTTTTATACAAGTAACATGTTGGACAATGTGAAGGGGAAAGGCGGATCGTGTACAAAAACACGCTGCGGTGTGCTTGGAGACGCAGGGTTTCCCAGATGCTGTGAATCACCCAAATTTCCCTTCCCGGGTCATAAACCTGGAGAGACTTATTTGCATCTTATGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

7.62

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 225
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 102
AhdI GACNNNNNGTC 1 cut(s) 110
AjnI CCWGG 2 cut(s) 148, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 231, 296
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 61, 154, 222
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 284, 285
AsuHPI GGTGA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 48, 141, 209
BciT130I CCWGG 2 cut(s) 150, 297
BcnI CCSGG 2 cut(s) 284, 285
BcoDI GTCTC 2 cut(s) 231, 296
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 3 cut(s) 62, 155, 223
BlsI GCNGC 3 cut(s) 63, 156, 224
Bme1390I CCNGG 4 cut(s) 150, 284, 285, 297
Bme18I GGWCC 1 cut(s) 138
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 138
BmrFI CCNGG 4 cut(s) 150, 284, 285, 297
BmsI GCATC 2 cut(s) 245, 322
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 2 cut(s) 284, 285
BsaJI CCNNGG 2 cut(s) 149, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 150, 297
BseDI CCNNGG 2 cut(s) 149, 283
BseLI CCNNNNNNNGG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 48, 141, 209
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 231, 296
BsmBI CGTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 33
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 2 cut(s) 201, 225
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 149, 283
BssMI GATC 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 150, 297
Bst4CI ACNGT 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 209
BstKTI GATC 1 cut(s) 206
BstMAI GTCTC 2 cut(s) 231, 296
BstMBI GATC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 2 cut(s) 150, 297
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 148, 282, 283, 295
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 48, 141, 209
CaiI CAGNNNCTG 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 283
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 175
CviJI RGCY 4 cut(s) 31, 61, 133, 154
CviKI_1 RGCY 4 cut(s) 31, 61, 133, 154
CviQI GTAC 1 cut(s) 210
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
DriI GACNNNNNGTC 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 148, 295
EcoT38I GRGCYC 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 1 cut(s) 178
FaiI YATR 7 cut(s) 18, 75, 146, 165, 176, 291, 320
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 62, 155, 223
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 62, 155, 223
FspBI CTAG 1 cut(s) 128
GluI GCNGC 3 cut(s) 62, 155, 223
GsuI CTGGAG 1 cut(s) 318
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 248
Hin1II CATG 1 cut(s) 178
HinfI GANTC 2 cut(s) 111, 263
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 138, 210
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 138, 210
HpyAV CCTTC 3 cut(s) 108, 184, 289
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 157, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 78, 135, 162, 228, 265, 282, 297, 309
Lsp1109I GCAGC 3 cut(s) 48, 141, 209
LweI GCATC 2 cut(s) 245, 322
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 112, 170
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 39, 272
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 2 cut(s) 54, 325
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 4 cut(s) 150, 284, 285, 297
MvaI CCWGG 2 cut(s) 150, 297
MwoI GCNNNNNNNGC 1 cut(s) 319
NciI CCSGG 2 cut(s) 284, 285
NdeII GATC 1 cut(s) 203
NlaIII CATG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 63, 156, 224
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 148, 295
PspGI CCWGG 2 cut(s) 148, 295
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 258
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 54, 325
SatI GCNGC 3 cut(s) 62, 155, 223
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 4 cut(s) 150, 284, 285, 297
SduI GDGCHC 1 cut(s) 33
SetI ASST 2 cut(s) 135, 298
SfaNI GCATC 2 cut(s) 245, 322
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 138
SmaI CCCGGG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 39, 272
SsiI CCGC 2 cut(s) 201, 225
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 4 cut(s) 148, 282, 283, 295
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 1 cut(s) 155
TasI AATT 2 cut(s) 39, 272
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 54, 325
Tru9I TTAA 2 cut(s) 54, 325
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 61, 154, 222
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 84
TspMI CCCGGG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 138
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 178
XmaI CCCGGG 1 cut(s) 283
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.