Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21133339 .. 21134016

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAGCTGCATTGTCAAGCTTTGGCTTGTGGGCCTGATACCCATCCTTTTGTTGGGACAACTTTGATTAGTATGTATGCTGAATGCGGGCGTGTTAAGTTTGCTCAAAAGGTGTTTGAGGAAATGCGTGAACCAAATGTGGTTGCGTGGAATGCGATTCTTACCTCGTGTTTTAGGTTTGGGAATGCAAAGGGTGCGGAGACGATGTTTGGCCAGATGCCTTTGAGGAATTTGACCTCTTGGAACATTTTGCTTGCAGGGTATGTGAAAACGGATGAGCTTGAGCTGGCTAAGAAGGCATTTTTGAGGATGCCGATGAAAGATGATGTGTCTTGGAGTACTATGATTGTGGGGTTTGCTCAGAATGGTTGCTTTGATGAGGCTTTTGGGTTTTTCAGGGAACTACAGAGGGAGGGAATTAGACCGAATGAGGCGAGCTTGACTGGAGTACTCTCTGCATGTGCGCAAGCTGGTGCATTTGAGTTTGGTAAAATTTTACATTGTTTAGTAGAGAAGGCTGGTTTGCTTTGGATGATTTCAGTCAATAATGCACTCCTGGATACCTACTCCAAATCTGGAAATGTGGACAGGGCTAGGTTGGTCTTCAAAAGAATGCCAGAGAAGAAGAGTATTATTTCGTGGACTTCAAAGATAGCAGCGCTTGCAATGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

226

Amino Acids

25.03

Weight (kDa)

8.68

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 155	1.1e-09	PPR repeat family
PPR	PF01535	110 - 140	3.6e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	465
AciI	CCGC	2 cut(s)	87, 197
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	229, 492
AfaI	GTAC	2 cut(s)	340, 450
AfeI	AGCGCT	1 cut(s)	660
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	607, 648
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	6 cut(s)	7, 20, 280, 286, 438, 470
AluI	AGCT	6 cut(s)	7, 20, 280, 286, 438, 470
Alw26I	GTCTC	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	660
AoxI	GGCC	2 cut(s)	32, 211
ApeKI	GCWGC	3 cut(s)	4, 7, 656
ApoI	RAATTY	2 cut(s)	229, 492
AspLEI	GCGC	2 cut(s)	466, 661
AspS9I	GGNCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	213
BauI	CACGAG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	16, 668
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	404
BfoI	RGCGCY	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	3 cut(s)	5, 8, 657
BlsI	GCNGC	3 cut(s)	6, 9, 658
BmcAI	AGTACT	2 cut(s)	340, 450
Bme1390I	CCNGG	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	2 cut(s)	207, 300
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	4 cut(s)	43, 280, 315, 537
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	16, 668
BshFI	GGCC	2 cut(s)	34, 213
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	4 cut(s)	89, 157, 190, 618
BsnI	GGCC	2 cut(s)	34, 213
BspACI	CCGC	2 cut(s)	87, 197
BspANI	GGCC	2 cut(s)	34, 213
BspCNI	CTCAG	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	448
BssSI	CACGAG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	2 cut(s)	194, 662
BstC8I	GCNNGC	6 cut(s)	89, 255, 288, 436, 468, 663
BstDEI	CTNAG	2 cut(s)	291, 360
BstF5I	GGATG	4 cut(s)	43, 280, 315, 537
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	466, 661
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 194, 296, 662, 667
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	16, 668
BstV2I	GAAGAC	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	34, 213
BtsCI	GGATG	4 cut(s)	43, 280, 315, 537
Cac8I	GCNNGC	6 cut(s)	89, 255, 288, 436, 468, 663
CfoI	GCGC	2 cut(s)	466, 661
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	339, 449
CviAII	CATG	2 cut(s)	459, 671
CviQI	GTAC	2 cut(s)	339, 449
DdeI	CTNAG	2 cut(s)	291, 360
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	2 cut(s)	462, 674
FaiI	YATR	6 cut(s)	74, 78, 264, 344, 460, 672
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	458, 670
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	5, 8, 657
FokI	GGATG	4 cut(s)	30, 287, 322, 544
Fsp4HI	GCNGC	3 cut(s)	5, 8, 657
FspBI	CTAG	1 cut(s)	594
FspI	TGCGCA	1 cut(s)	465
GlaI	GCGC	2 cut(s)	465, 660
GluI	GCNGC	3 cut(s)	5, 8, 657
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	34, 213
HhaI	GCGC	2 cut(s)	466, 661
Hin1II	CATG	2 cut(s)	462, 674
Hin6I	GCGC	2 cut(s)	464, 659
HinP1I	GCGC	2 cut(s)	464, 659
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	131, 586, 642
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	3 cut(s)	131, 586, 642
HpyAV	CCTTC	2 cut(s)	289, 508
HpyCH4V	TGCA	9 cut(s)	4, 10, 188, 257, 458, 476, 551, 665, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 194, 296, 662, 667
HpyF3I	CTNAG	2 cut(s)	291, 360
Hsp92II	CATG	2 cut(s)	462, 674
HspAI	GCGC	2 cut(s)	464, 659
Lsp1109I	GCAGC	2 cut(s)	16, 668
LweI	GCATC	2 cut(s)	207, 300
MaeI	CTAG	1 cut(s)	594
MboII	GAAGA	3 cut(s)	595, 634, 637
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	3 cut(s)	229, 417, 492
MluNI	TGGCCA	1 cut(s)	213
MnlI	CCTC	9 cut(s)	112, 175, 219, 247, 300, 373, 402, 406, 424
Mox20I	TGGCCA	1 cut(s)	213
Mph1103I	ATGCAT	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	557
Mva1269I	GAATGC	4 cut(s)	89, 157, 190, 618
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	5 cut(s)	152, 194, 296, 662, 667
NlaIII	CATG	2 cut(s)	462, 674
NsbI	TGCGCA	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	1 cut(s)	462
PctI	GAATGC	4 cut(s)	89, 157, 190, 618
PfeI	GAWTC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	6, 9, 658
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	2 cut(s)	340, 450
RsaNI	GTAC	2 cut(s)	339, 449
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	5, 8, 657
Sau96I	GGNCC	1 cut(s)	32
ScaI	AGTACT	2 cut(s)	340, 450
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	207, 300
SfcI	CTRYAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	229, 417, 492
SsiI	CCGC	2 cut(s)	87, 197
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	555
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	3 cut(s)	229, 417, 492
TatI	WGTACW	2 cut(s)	338, 448
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	3 cut(s)	4, 7, 656
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	287
XapI	RAATTY	2 cut(s)	229, 492
XceI	RCATGY	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	594
ZrmI	AGTACT	2 cut(s)	340, 450
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.