pycom06g17200

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
21223093 .. 21223290
198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGCAGGATTCAGCAACGCAGATTCACACAGCTCGTCATTTGGAAGGATTCGGCCGGCTTTGACGCTCTTCCCTTCACCAGTACTGTGCAAAGACAGAAGCAAATTTGTGTTTTGGGACGAGTACCATCCATCAGATAGCGCAAACGAGCTTATTGCCAAGGAGATCGATCAAGAAATTCAGTTTCTCGCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.36

Weight (kDa)

5.39

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 2 cut(s) 104, 177
AfaI GTAC 2 cut(s) 84, 125
AluBI AGCT 2 cut(s) 33, 151
AluI AGCT 2 cut(s) 33, 151
AoxI GGCC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 104, 177
AspLEI GCGC 2 cut(s) 143, 193
AsuHPI GGTGA 1 cut(s) 69
BccI CCATC 2 cut(s) 135, 139
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BmcAI AGTACT 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 80
BseX3I CGGCCG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 165, 169
BspANI GGCC 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 165, 169
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 57
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 143, 193
BstKTI GATC 2 cut(s) 168, 172
BstMBI GATC 2 cut(s) 165, 169
BstMCI CGRYCG 1 cut(s) 56
BstUI CGCG 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 2 cut(s) 143, 193
Cfr10I RCCGGY 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 83, 124
CviJI RGCY 4 cut(s) 33, 55, 59, 151
CviKI_1 RGCY 4 cut(s) 33, 55, 59, 151
CviQI GTAC 2 cut(s) 83, 124
DpnI GATC 2 cut(s) 167, 171
DpnII GATC 2 cut(s) 165, 169
EaeI YGGCCR 1 cut(s) 53
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 159
Eco52I CGGCCG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaqI GGGAC 1 cut(s) 131
FokI GGATG 1 cut(s) 114
GlaI GCGC 2 cut(s) 142, 192
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 143, 193
Hin6I GCGC 2 cut(s) 141, 191
HinP1I GCGC 2 cut(s) 141, 191
HinfI GANTC 3 cut(s) 9, 23, 49
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 39, 84
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 90
HspAI GCGC 2 cut(s) 141, 191
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 165, 169
LguI GCTCTTC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 69, 93
MalI GATC 2 cut(s) 167, 171
MboI GATC 2 cut(s) 165, 169
MboII GAAGA 1 cut(s) 61
MluCI AATT 2 cut(s) 104, 177
MroNI GCCGGC 1 cut(s) 55
MspI CCGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 2 cut(s) 165, 169
NgoMIV GCCGGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 9, 23, 49
RsaI GTAC 2 cut(s) 84, 125
RsaNI GTAC 2 cut(s) 83, 124
SapI GCTCTTC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 165, 169
ScaI AGTACT 1 cut(s) 84
SetI ASST 2 cut(s) 35, 153
SgeI CNNG 8 cut(s) 18, 46, 68, 92, 133, 160, 172, 185
Sse9I AATT 2 cut(s) 104, 177
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 104, 177
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 3 cut(s) 9, 23, 49
XapI RAATTY 2 cut(s) 104, 177
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.