pycom06g17300

Endoplasmic reticulum membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
21290996 .. 21291413
418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGGGAGGACCGGATTGTTCGATCTGGAACGGCACTTCGCCTTCTACGGCGCTTATCACAGGAACCCAGTTAACATTTTGATCCACAACTGTTTGTGTGGCCGATTTTCTTCATCTCTCTGGGTTTGCTTTCACTGCGATGTATGCTTGGATAAGAAAGCTGGCTCCATTGCTGCTTTGCTCTGTGTACTCTGCTGGGTCCAATCCACCCTGCTTGCTAGCCGTCTTGGGTTTTCTCTGTCATGGAAGGTAAAGCTGAAAGCTCTCTCCTTTTTGCGATTTCCGGGTGATGGTTTTATGGTTCTAAGGATTTGGATTTTGGGTTCGATGGAATGGTTTTCTAACTTTTTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

9.16

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 100
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 290
AloI GAACNNNNNNTCC 2 cut(s) 307, 339
AluBI AGCT 3 cut(s) 161, 256, 263
AluI AGCT 3 cut(s) 161, 256, 263
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 9, 199
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 2 cut(s) 9, 199
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 284, 322
BceAI ACGGC 3 cut(s) 47, 64, 207
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 2 cut(s) 9, 199
BmgT120I GGNCC 2 cut(s) 9, 199
BmiI GGNNCC 3 cut(s) 65, 166, 200
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 62
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 195
BshFI GGCC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 12, 284
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 22, 81
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 3 cut(s) 65, 166, 200
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 68
BssMI GATC 2 cut(s) 22, 81
Bst4CI ACNGT 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 163, 216, 220
BstDEI CTNAG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 25, 84
BstMBI GATC 2 cut(s) 22, 81
BstMWI GCNNNNNNNGC 2 cut(s) 135, 144
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 163, 216, 220
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 9, 199
Csp6I GTAC 1 cut(s) 188
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 1 cut(s) 243
CviJI RGCY 6 cut(s) 102, 161, 165, 222, 256, 263
CviKI_1 RGCY 6 cut(s) 102, 161, 165, 222, 256, 263
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 305
DpnI GATC 2 cut(s) 24, 83
DpnII GATC 2 cut(s) 22, 81
EaeI YGGCCR 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 9, 199
FaeI CATG 1 cut(s) 246
FaiI YATR 3 cut(s) 145, 244, 299
FatI CATG 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 12, 284
HhaI GCGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 12, 284
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 73, 188
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 73, 188
HpyAV CCTTC 2 cut(s) 52, 241
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 144
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 22, 81
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 11, 25, 46, 81, 106, 147, 181, 224, 297
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 219
MalI GATC 2 cut(s) 24, 83
MboI GATC 2 cut(s) 22, 81
MboII GAAGA 1 cut(s) 102
MseI TTAA 2 cut(s) 72, 350
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 2 cut(s) 12, 284
MspR9I CCNGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 135, 144
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 22, 81
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 3 cut(s) 65, 166, 200
PkrI GCNGC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 65, 166, 200
PspPI GGNCC 2 cut(s) 9, 199
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 2 cut(s) 72, 350
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 22, 81
Sau96I GGNCC 2 cut(s) 9, 199
ScrFI CCNGG 1 cut(s) 285
SetI ASST 4 cut(s) 163, 252, 258, 265
SinI GGWCC 2 cut(s) 9, 199
SmiMI CAYNNNNRTG 1 cut(s) 138
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 21, 326
TatI WGTACW 1 cut(s) 187
Tru1I TTAA 2 cut(s) 72, 350
Tru9I TTAA 2 cut(s) 72, 350
TscAI CASTG 1 cut(s) 140
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 9, 199
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.