Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21705136 .. 21707069

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTAGGGCGGAGGCTCTTCGGAGACGGCAGCGGGGGCGAAGATCAGAAGGCCGACGACTTCAAATCCATGGTGGTGGAGTTGATGACGTTGGCTGGCGTTTTCAACATCGGCGACTTCATCCCGGCCCTCGAGTGGCTGGATTTGCAGGGGGTAGCGGGAAAGATGAAGAAGCTGCACAAGAGGTTCGATGCCTTCTTGACCGCCATTGTTGAAGACCACAAGAGGAGCGGCGGAGGGAAGCACTTGGACATGCTGACGACGTTGCTGTCGCTCAAGGATAATGCTGAAGGTGAGGGCGCCAAGATCACGGACACTGAGATTAAAGCTTTGCTTTTGAACATGTTCACAGCTGGCACTGACACGTCATCAAGCACTGTGGAATGGGGCATAGCAGAACTCATTCGCCACCCCAAGATTCTAGCCCAACTCCAACAAGAGTTGGACCAAGTAGTGGGCCAGGACCGGCTCGTAACCGAGTCAGACCTGACCAACTTGACCTACCTCAAAGCAGTAATCAAGGAAACCTTTCGGCTACACCCGTCAACCCCACTCTCCCTACCTCGAATGGGGTCCGAGAGTTGCGAAATCAACGAGTTCCACATCCCCAAGGGTGCCACTCTTTTGGTCAACATATGGGCCATATCTCGCGACCCGGCCCAATGGTCCGAACCGCTCGAATTTAGACCCGAGCGGTTCTTGCCAGGTGGAGAGAAACCCAATGTGGATGTCAGGGGTAATCATTTCGAGGTGATACCGTTTGGGGCCGGGCGGAGAATATGCTCCGGGATGACCCTTGGGCTGCATATGGTGTCTCTAATTACTGCGACCCTGGTCCATGGTTTTGATTGGACCTTGGCTGATGGGCTCACCCCTCAGAAATTAAACATGGACGAGGCTTTTGGGATCTCACTACAAAGAGCCATACCATTAATGGTGCACCCACGTAACAGGCTAGCCCCTTATGCATATAATGCGTCATCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00941 ko00944 ko01100 ko01110 map00941 map00944 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

330

Amino Acids

36.3

Weight (kDa)

5.83

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 299	1e-79	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	268
AccB1I	GGYRCC	2 cut(s)	299, 614
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccBSI	CCGCTC	3 cut(s)	231, 676, 694
AccII	CGCG	1 cut(s)	651
AciI	CCGC	9 cut(s)	10, 33, 158, 204, 231, 234, 674, 694, 772
AclWI	GGATC	1 cut(s)	914
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	135, 454, 569
AflIII	ACRYGT	2 cut(s)	342, 363
AgsI	TTSAA	4 cut(s)	64, 106, 215, 340
AjiI	CACGTC	1 cut(s)	366
AjnI	CCWGG	3 cut(s)	459, 703, 831
AluBI	AGCT	3 cut(s)	175, 329, 353
AluI	AGCT	3 cut(s)	175, 329, 353
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	2 cut(s)	18, 819
Alw44I	GTGCAC	1 cut(s)	938
AlwI	GGATC	1 cut(s)	914
Ama87I	CYCGRG	2 cut(s)	131, 689
AoxI	GGCC	6 cut(s)	51, 126, 457, 639, 657, 765
ApaLI	GTGCAC	1 cut(s)	938
ApeKI	GCWGC	3 cut(s)	30, 175, 802
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AseI	ATTAAT	1 cut(s)	932
Asp700I	GAANNNNTTC	3 cut(s)	344, 402, 528
AspLEI	GCGC	1 cut(s)	302
AsuC2I	CCSGG	4 cut(s)	125, 656, 769, 787
AsuHPI	GGTGA	4 cut(s)	305, 763, 862, 975
AsuNHI	GCTAGC	1 cut(s)	955
AvaI	CYCGRG	2 cut(s)	131, 689
AvaII	GGWCC	6 cut(s)	445, 463, 573, 666, 835, 852
BaeGI	GKGCMC	1 cut(s)	942
BanI	GGYRCC	2 cut(s)	299, 614
BanII	GRGCYC	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	42, 162, 789
BccI	CCATC	1 cut(s)	857
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	461, 705, 833
BcnI	CCSGG	4 cut(s)	125, 656, 769, 787
BcoDI	GTCTC	2 cut(s)	18, 819
BfaI	CTAG	2 cut(s)	422, 956
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	4 cut(s)	31, 176, 232, 803
BlsI	GCNGC	4 cut(s)	32, 177, 233, 804
Bme1390I	CCNGG	7 cut(s)	125, 461, 656, 705, 769, 787, 833
Bme18I	GGWCC	6 cut(s)	445, 463, 573, 666, 835, 852
BmeT110I	CYCGRG	2 cut(s)	131, 689
BmgBI	CACGTC	1 cut(s)	366
BmiI	GGNNCC	4 cut(s)	301, 574, 616, 766
BmrFI	CCNGG	7 cut(s)	125, 461, 656, 705, 769, 787, 833
BmsI	GCATC	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	959
BoxI	GACNNNNGTC	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	4 cut(s)	125, 656, 769, 787
BsaAI	YACGTR	1 cut(s)	947
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	6 cut(s)	69, 609, 796, 831, 838, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 454, 569
Bse118I	RCCGGY	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	461, 705, 833
BseDI	CCNNGG	6 cut(s)	69, 609, 796, 831, 838, 855
BseGI	GGATG	4 cut(s)	120, 603, 733, 795
BseLI	CCNNNNNNNGG	3 cut(s)	135, 454, 569
BseMII	CTCAG	2 cut(s)	309, 890
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	942
BseXI	GCAGC	3 cut(s)	42, 162, 789
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	6 cut(s)	53, 128, 459, 641, 659, 767
BshNI	GGYRCC	2 cut(s)	299, 614
BsiHKAI	GWGCWC	1 cut(s)	942
BsiHKCI	CYCGRG	2 cut(s)	131, 689
BsiSI	CCGG	5 cut(s)	125, 466, 656, 768, 786
BslI	CCNNNNNNNGG	3 cut(s)	135, 454, 569
BsmAI	GTCTC	2 cut(s)	18, 819
BsmBI	CGTCTC	1 cut(s)	18
BsnI	GGCC	6 cut(s)	53, 128, 459, 641, 659, 767
BsoBI	CYCGRG	2 cut(s)	131, 689
Bsp1286I	GDGCHC	2 cut(s)	870, 942
Bsp143I	GATC	3 cut(s)	43, 306, 906
Bsp19I	CCATGG	2 cut(s)	69, 838
Bsp68I	TCGCGA	1 cut(s)	651
BspACI	CCGC	9 cut(s)	10, 33, 158, 204, 231, 234, 674, 694, 772
BspANI	GGCC	6 cut(s)	53, 128, 459, 641, 659, 767
BspCNI	CTCAG	2 cut(s)	310, 889
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	4 cut(s)	301, 574, 616, 766
BspOI	GCTAGC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	914
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	2 cut(s)	299, 614
BsrBI	CCGCTC	3 cut(s)	231, 676, 694
BsrFI	RCCGGY	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	6 cut(s)	69, 609, 796, 831, 838, 855
BssMI	GATC	3 cut(s)	43, 306, 906
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	5 cut(s)	69, 609, 796, 838, 855
Bst2UI	CCWGG	3 cut(s)	461, 705, 833
Bst4CI	ACNGT	2 cut(s)	379, 759
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	3 cut(s)	97, 355, 957
BstDEI	CTNAG	2 cut(s)	318, 876
BstDSI	CCRYGG	2 cut(s)	69, 838
BstF5I	GGATG	4 cut(s)	120, 603, 733, 795
BstFNI	CGCG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	3 cut(s)	46, 309, 909
BstMAI	GTCTC	2 cut(s)	18, 819
BstMBI	GATC	3 cut(s)	43, 306, 906
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 145, 700, 965, 974
BstNI	CCWGG	3 cut(s)	461, 705, 833
BstNSI	RCATGY	2 cut(s)	256, 346
BstPAI	GACNNNNGTC	1 cut(s)	833
BstSCI	CCNGG	7 cut(s)	123, 459, 654, 703, 767, 785, 831
BstSLI	GKGCMC	1 cut(s)	942
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	42, 162, 789
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	906
BstXI	CCANNNNNNTGG	2 cut(s)	76, 625
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	6 cut(s)	53, 128, 459, 641, 659, 767
BtgI	CCRYGG	2 cut(s)	69, 838
BtrI	CACGTC	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	120, 603, 733, 795
BtsIMutI	CAGTG	3 cut(s)	315, 357, 375
BtuMI	TCGCGA	1 cut(s)	651
Cac8I	GCNNGC	3 cut(s)	97, 355, 957
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	465
CseI	GACGC	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	5 cut(s)	70, 253, 343, 839, 889
DdeI	CTNAG	2 cut(s)	318, 876
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	3 cut(s)	45, 308, 908
DpnII	GATC	3 cut(s)	43, 306, 906
DrdI	GACNNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	3 cut(s)	25, 249, 787
Eco130I	CCWWGG	5 cut(s)	69, 609, 796, 838, 855
Eco24I	GRGCYC	1 cut(s)	870
Eco47I	GGWCC	6 cut(s)	445, 463, 573, 666, 835, 852
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	131, 689
EcoRII	CCWGG	3 cut(s)	459, 703, 831
EcoT14I	CCWWGG	5 cut(s)	69, 609, 796, 838, 855
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	870
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
ErhI	CCWWGG	5 cut(s)	69, 609, 796, 838, 855
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	5 cut(s)	73, 256, 346, 842, 892
FalI	AAGNNNNNCTT	4 cut(s)	318, 350, 512, 544
FatI	CATG	5 cut(s)	69, 252, 342, 838, 888
FauI	CCCGC	2 cut(s)	26, 151
FauNDI	CATATG	2 cut(s)	635, 807
Fnu4HI	GCNGC	4 cut(s)	31, 176, 232, 803
FokI	GGATG	4 cut(s)	107, 590, 740, 802
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	4 cut(s)	31, 176, 232, 803
FspBI	CTAG	2 cut(s)	422, 956
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	31, 176, 232, 803
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	6 cut(s)	53, 128, 459, 641, 659, 767
HapII	CCGG	5 cut(s)	125, 466, 656, 768, 786
HgaI	GACGC	1 cut(s)	966
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	73, 256, 346, 842, 892
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	2 cut(s)	546, 631
HindII	GTYRAC	2 cut(s)	546, 631
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	2 cut(s)	418, 479
HpaII	CCGG	5 cut(s)	125, 466, 656, 768, 786
HphI	GGTGA	4 cut(s)	305, 763, 862, 975
Hpy166II	GTNNAC	4 cut(s)	348, 546, 631, 940
Hpy188I	TCNGA	6 cut(s)	23, 48, 484, 577, 670, 879
Hpy188III	TCNNGA	2 cut(s)	199, 650
Hpy8I	GTNNAC	4 cut(s)	348, 546, 631, 940
Hpy99I	CGWCG	2 cut(s)	59, 265
HpyAV	CCTTC	3 cut(s)	43, 205, 284
HpyCH4III	ACNGT	2 cut(s)	379, 759
HpyCH4IV	ACGT	4 cut(s)	89, 263, 365, 946
HpyCH4V	TGCA	5 cut(s)	148, 178, 805, 940, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 145, 700, 965, 974
HpyF3I	CTNAG	2 cut(s)	318, 876
HpySE526I	ACGT	4 cut(s)	89, 263, 365, 946
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	73, 256, 346, 842, 892
HspAI	GCGC	1 cut(s)	300
KasI	GGCGCC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	43, 306, 906
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	228, 788
Lsp1109I	GCAGC	3 cut(s)	42, 162, 789
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	422, 956
MaeII	ACGT	4 cut(s)	89, 263, 365, 946
MaeIII	GTNAC	2 cut(s)	472, 947
MalI	GATC	3 cut(s)	45, 308, 908
MbiI	CCGCTC	3 cut(s)	231, 676, 694
MboI	GATC	3 cut(s)	43, 306, 906
MboII	GAAGA	4 cut(s)	10, 53, 181, 227
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	2 cut(s)	870, 942
MluCI	AATT	3 cut(s)	680, 819, 881
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	423, 457
Mph1103I	ATGCAT	1 cut(s)	970
MroXI	GAANNNNTTC	3 cut(s)	344, 402, 528
MseI	TTAA	3 cut(s)	324, 884, 932
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	33, 353
MspI	CCGG	5 cut(s)	125, 466, 656, 768, 786
MspR9I	CCNGG	7 cut(s)	125, 461, 656, 705, 769, 787, 833
MvaI	CCWGG	3 cut(s)	461, 705, 833
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	5 cut(s)	36, 145, 700, 965, 974
NarI	GGCGCC	1 cut(s)	300
NciI	CCSGG	4 cut(s)	125, 656, 769, 787
NcoI	CCATGG	2 cut(s)	69, 838
NdeI	CATATG	2 cut(s)	635, 807
NdeII	GATC	3 cut(s)	43, 306, 906
NheI	GCTAGC	1 cut(s)	955
NlaIII	CATG	5 cut(s)	73, 256, 346, 842, 892
NlaIV	GGNNCC	4 cut(s)	301, 574, 616, 766
NruI	TCGCGA	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	2 cut(s)	256, 346
PaeR7I	CTCGAG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	23
PdmI	GAANNNNTTC	3 cut(s)	344, 402, 528
PfeI	GAWTC	1 cut(s)	418
PflMI	CCANNNNNTGG	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	32, 177, 233, 804
PleI	GAGTC	1 cut(s)	487
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	947
PscI	ACATGT	1 cut(s)	342
PshAI	GACNNNNGTC	1 cut(s)	833
PshBI	ATTAAT	1 cut(s)	932
Psp6I	CCWGG	3 cut(s)	459, 703, 831
PspGI	CCWGG	3 cut(s)	459, 703, 831
PspN4I	GGNNCC	4 cut(s)	301, 574, 616, 766
PspXI	VCTCGAGB	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	906
PvuII	CAGCTG	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	324, 884, 932
SatI	GCNGC	4 cut(s)	31, 176, 232, 803
Sau3AI	GATC	3 cut(s)	43, 306, 906
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	7 cut(s)	125, 461, 656, 705, 769, 787, 833
SduI	GDGCHC	2 cut(s)	870, 942
SfaNI	GCATC	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	6 cut(s)	445, 463, 573, 666, 835, 852
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	131, 275
SmoI	CTYRAG	2 cut(s)	131, 275
Sse9I	AATT	3 cut(s)	680, 819, 881
SsiI	CCGC	9 cut(s)	10, 33, 158, 204, 231, 234, 674, 694, 772
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	422, 956
StyD4I	CCNGG	7 cut(s)	123, 459, 654, 703, 767, 785, 831
StyI	CCWWGG	5 cut(s)	69, 609, 796, 838, 855
TaaI	ACNGT	2 cut(s)	379, 759
TaiI	ACGT	4 cut(s)	92, 266, 368, 949
TaqI	TCGA	5 cut(s)	132, 189, 565, 678, 747
TasI	AATT	3 cut(s)	680, 819, 881
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	3 cut(s)	324, 884, 932
Tru9I	TTAA	3 cut(s)	324, 884, 932
TscAI	CASTG	3 cut(s)	322, 364, 382
TseI	GCWGC	3 cut(s)	30, 175, 802
TspDTI	ATGAA	2 cut(s)	109, 182
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	322, 364, 382
Van91I	CCANNNNNTGG	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	938
VpaK11BI	GGWCC	6 cut(s)	445, 463, 573, 666, 835, 852
VspI	ATTAAT	1 cut(s)	932
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	2 cut(s)	256, 346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	3 cut(s)	344, 402, 528
XspI	CTAG	2 cut(s)	422, 956
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.