pycom06g17940

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
21871125 .. 21872319
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGAGAATCTGCCAAGTACTTGTCGAGCCACATTTTAGCCTCAAATCTTATAAAATAAAGGTAATTTATCTTGCATTGATTTTTTTAACCATTAGTGTATATCTTACCACTCCCTTGGATGTGATCAAAACAAGACTGCACGTACAAGGATCAACCTTGAGGTACAAAGGCTGGTTGGATGCAATTCGCAGCGTATGGAGGGCCGAAGGTGCACAAGGGATGTTCAGAGGCCGCATCCCCAGGGTTACATGGTATATTCCAGCTTCAGCACTTACGTTTATGGGTTACGTGTACATACACACATATAAATTGCATTTTTTCCAAGGAAAGAAAGAGATTTATCCAAAACCTCCGGCAAGCGGCCTCATTGTGCGAGTTATCTCCTTGAATGGTGATGGTTGGGTAAAAAATTACTCCCTGAGGACGTTGCTGGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

147

Amino Acids

16.84

Weight (kDa)

10.17

Isoelectric Point (pI)

10.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 29 - 102 9.7e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AciI CCGC 2 cut(s) 232, 360
AclWI GGATC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 4 cut(s) 18, 144, 164, 293
AfiI CCNNNNNNNGG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 1 cut(s) 157
AoxI GGCC 3 cut(s) 201, 229, 361
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 1 cut(s) 123
BisI GCNGC 3 cut(s) 190, 232, 361
BlsI GCNGC 3 cut(s) 191, 233, 362
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 169, 243
BpuEI CTTGAG 1 cut(s) 178
BsaAI YACGTR 2 cut(s) 142, 289
BsaJI CCNNGG 4 cut(s) 114, 239, 240, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse21I CCTNAGG 1 cut(s) 419
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 4 cut(s) 114, 239, 240, 322
BseGI GGATG 4 cut(s) 124, 184, 225, 234
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 3 cut(s) 203, 231, 363
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 359
BsnI GGCC 3 cut(s) 203, 231, 363
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 123, 149
BspACI CCGC 2 cut(s) 232, 360
BspANI GGCC 3 cut(s) 203, 231, 363
BspCNI CTCAG 1 cut(s) 411
BspPI GGATC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 114, 239, 240, 322
BssMI GATC 2 cut(s) 123, 149
BssT1I CCWWGG 2 cut(s) 114, 322
Bst2UI CCWGG 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 2 cut(s) 142, 289
BstC8I GCNNGC 2 cut(s) 358, 432
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 124, 184, 225, 234
BstKTI GATC 2 cut(s) 126, 152
BstMBI GATC 2 cut(s) 123, 149
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 419
BsuRI GGCC 3 cut(s) 203, 231, 363
BtsCI GGATG 4 cut(s) 124, 184, 225, 234
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 358, 432
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 4 cut(s) 17, 143, 163, 292
CviAII CATG 1 cut(s) 249
CviJI RGCY 7 cut(s) 28, 39, 171, 203, 231, 263, 363
CviKI_1 RGCY 7 cut(s) 28, 39, 171, 203, 231, 263, 363
CviQI GTAC 4 cut(s) 17, 143, 163, 292
DdeI CTNAG 1 cut(s) 419
DpnI GATC 2 cut(s) 125, 151
DpnII GATC 2 cut(s) 123, 149
Eco130I CCWWGG 2 cut(s) 114, 322
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 2 cut(s) 114, 322
ErhI CCWWGG 2 cut(s) 114, 322
FaeI CATG 1 cut(s) 252
FaiI YATR 9 cut(s) 51, 100, 196, 250, 255, 281, 296, 304, 306
FatI CATG 1 cut(s) 248
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 190, 232, 361
FokI GGATG 4 cut(s) 131, 191, 221, 232
Fsp4HI GCNGC 3 cut(s) 190, 232, 361
GluI GCNGC 3 cut(s) 190, 232, 361
HaeIII GGCC 3 cut(s) 203, 231, 363
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 252
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 212, 292
Hpy188I TCNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 212, 292
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 4 cut(s) 141, 275, 288, 425
HpyCH4V TGCA 5 cut(s) 74, 139, 182, 212, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 4 cut(s) 141, 275, 288, 425
Hsp92II CATG 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 149
LpnPI CCDG 7 cut(s) 157, 226, 253, 273, 366, 416, 431
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 2 cut(s) 169, 243
MaeII ACGT 4 cut(s) 141, 275, 288, 425
MaeIII GTNAC 2 cut(s) 244, 284
MalI GATC 2 cut(s) 125, 151
MboI GATC 2 cut(s) 123, 149
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 4 cut(s) 63, 183, 308, 409
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 7 cut(s) 50, 153, 192, 221, 360, 374, 414
MseI TTAA 1 cut(s) 86
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 2 cut(s) 123, 149
NlaIII CATG 1 cut(s) 252
PasI CCCWGGG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 3 cut(s) 191, 233, 362
Ppu21I YACGTR 2 cut(s) 142, 289
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 4 cut(s) 18, 144, 164, 293
RsaNI GTAC 4 cut(s) 17, 143, 163, 292
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 190, 232, 361
Sau3AI GATC 2 cut(s) 123, 149
Sau96I GGNCC 1 cut(s) 201
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 2 cut(s) 169, 243
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 4 cut(s) 63, 183, 308, 409
SsiI CCGC 2 cut(s) 232, 360
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 2 cut(s) 114, 322
TaiI ACGT 4 cut(s) 144, 278, 291, 428
TaqI TCGA 1 cut(s) 24
TasI AATT 4 cut(s) 63, 183, 308, 409
TatI WGTACW 2 cut(s) 16, 291
TauI GCSGC 2 cut(s) 234, 363
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 441
TseI GCWGC 1 cut(s) 189
TspRI CASTG 1 cut(s) 441
VneI GTGCAC 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.