Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21876376 .. 21876828

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTTGTAGAATTAAACAAGGCTCAAAGAATGGTTATGGATCCTTCATGTGAAGGTTCAAACTTGATTTCTGGTGACGTGCTACGGTCAGATCCATCCATGGATCCCGTTCTTTCTTTGAATCCACTGAGAGGTGCTGGTTTGCTTTTGGGTCTTGACTGCTCTAAGGAATTTCTCAAGAAGTTTCAGCTTAAGGTAAAATATAAGATGGAATCTGCACTTCGTGTTATTAGGCAATTGAACCGGTCAACTATACTAACATTCAATTGCCTAATAACACGATGCAGATTTCATCTTATACCTTTAGCTGAAATTTCTTTGTGCAGTCAGGACCTCAAAGTAAACCAGCACCTCTCAGTTGATTCAAAGAAAGATTGGGATCCATGGATGCATCTGACCCTAGCACGTCACCAGGAATCAACATACATGGATGCATCTGACCCTAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

8.3

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	7 cut(s)	35, 48, 86, 98, 111, 374, 387
AcsI	RAATTY	2 cut(s)	170, 312
AdeI	CACNNNGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	243
AgsI	TTSAA	5 cut(s)	60, 121, 241, 265, 366
AjiI	CACGTC	2 cut(s)	79, 407
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	2 cut(s)	190, 308
AluI	AGCT	2 cut(s)	190, 308
AlwI	GGATC	7 cut(s)	35, 48, 86, 98, 111, 374, 387
ApoI	RAATTY	2 cut(s)	170, 312
AsiGI	ACCGGT	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	86, 401
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	3 cut(s)	40, 103, 379
BccI	CCATC	2 cut(s)	103, 202
BciT130I	CCWGG	1 cut(s)	413
BfaI	CTAG	2 cut(s)	401, 444
BfrI	CTTAAG	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	331
BmgBI	CACGTC	2 cut(s)	79, 407
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	3 cut(s)	42, 105, 381
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	5 cut(s)	272, 378, 400, 421, 443
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	99, 383
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	99, 383
BseGI	GGATG	3 cut(s)	95, 393, 436
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	119, 369
BsgI	GTGCAG	2 cut(s)	201, 343
BshTI	ACCGGT	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	40, 91, 103, 379
Bsp19I	CCATGG	2 cut(s)	99, 383
BspCNI	CTCAG	2 cut(s)	120, 368
BspLI	GGNNCC	3 cut(s)	42, 105, 381
BspPI	GGATC	7 cut(s)	35, 48, 86, 98, 111, 374, 387
BspTI	CTTAAG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	99, 383
BssMI	GATC	4 cut(s)	40, 91, 103, 379
BssT1I	CCWWGG	2 cut(s)	99, 383
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	128, 165, 355
BstDSI	CCRYGG	2 cut(s)	99, 383
BstF5I	GGATG	3 cut(s)	95, 393, 436
BstKTI	GATC	4 cut(s)	43, 94, 106, 382
BstMBI	GATC	4 cut(s)	40, 91, 103, 379
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstX2I	RGATCY	4 cut(s)	40, 91, 103, 379
BstYI	RGATCY	4 cut(s)	40, 91, 103, 379
BtgI	CCRYGG	2 cut(s)	99, 383
BtrI	CACGTC	2 cut(s)	79, 407
BtsCI	GGATG	3 cut(s)	95, 393, 436
BtsIMutI	CAGTG	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	243
CviAII	CATG	4 cut(s)	48, 100, 384, 427
CviJI	RGCY	3 cut(s)	23, 190, 308
CviKI_1	RGCY	3 cut(s)	23, 190, 308
DdeI	CTNAG	3 cut(s)	128, 165, 355
DpnI	GATC	4 cut(s)	42, 93, 105, 381
DpnII	GATC	4 cut(s)	40, 91, 103, 379
DraIII	CACNNNGTG	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	99, 383
Eco47I	GGWCC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	2 cut(s)	99, 383
EcoT22I	ATGCAT	2 cut(s)	393, 436
ErhI	CCWWGG	2 cut(s)	99, 383
FaeI	CATG	4 cut(s)	51, 103, 387, 430
FatI	CATG	4 cut(s)	47, 99, 383, 426
FokI	GGATG	3 cut(s)	82, 400, 443
FspBI	CTAG	2 cut(s)	401, 444
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	4 cut(s)	51, 103, 387, 430
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	4 cut(s)	121, 212, 362, 416
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	86, 401
Hpy166II	GTNNAC	2 cut(s)	249, 343
Hpy188I	TCNGA	3 cut(s)	91, 396, 439
Hpy188III	TCNNGA	3 cut(s)	155, 178, 329
Hpy8I	GTNNAC	2 cut(s)	249, 343
HpyAV	CCTTC	2 cut(s)	47, 54
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	2 cut(s)	78, 406
HpyCH4V	TGCA	5 cut(s)	218, 285, 324, 391, 434
HpyF3I	CTNAG	3 cut(s)	128, 165, 355
HpySE526I	ACGT	2 cut(s)	78, 406
Hsp92II	CATG	4 cut(s)	51, 103, 387, 430
Kzo9I	GATC	4 cut(s)	40, 91, 103, 379
LpnPI	CCDG	7 cut(s)	57, 123, 257, 314, 359, 398, 425
LweI	GCATC	5 cut(s)	272, 378, 400, 421, 443
MaeI	CTAG	2 cut(s)	401, 444
MaeII	ACGT	2 cut(s)	78, 406
MaeIII	GTNAC	2 cut(s)	74, 407
MalI	GATC	4 cut(s)	42, 93, 105, 381
MboI	GATC	4 cut(s)	40, 91, 103, 379
MfeI	CAATTG	2 cut(s)	236, 265
MflI	RGATCY	4 cut(s)	40, 91, 103, 379
MluCI	AATT	5 cut(s)	11, 170, 236, 265, 312
MnlI	CCTC	3 cut(s)	125, 344, 362
Mph1103I	ATGCAT	2 cut(s)	393, 436
MseI	TTAA	2 cut(s)	14, 192
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	413
MunI	CAATTG	2 cut(s)	236, 265
MvaI	CCWGG	1 cut(s)	413
NcoI	CCATGG	2 cut(s)	99, 383
NdeII	GATC	4 cut(s)	40, 91, 103, 379
NlaIII	CATG	4 cut(s)	51, 103, 387, 430
NlaIV	GGNNCC	3 cut(s)	42, 105, 381
NmuCI	GTSAC	2 cut(s)	74, 407
NsiI	ATGCAT	2 cut(s)	393, 436
PfeI	GAWTC	4 cut(s)	121, 212, 362, 416
PinAI	ACCGGT	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	42, 105, 381
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	4 cut(s)	40, 91, 103, 379
SaqAI	TTAA	2 cut(s)	14, 192
Sau3AI	GATC	4 cut(s)	40, 91, 103, 379
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	413
SfaNI	GCATC	5 cut(s)	272, 378, 400, 421, 443
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	176, 191
SmoI	CTYRAG	2 cut(s)	176, 191
Sse9I	AATT	5 cut(s)	11, 170, 236, 265, 312
SspMI	CTAG	2 cut(s)	401, 444
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	99, 383
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	2 cut(s)	81, 409
TasI	AATT	5 cut(s)	11, 170, 236, 265, 312
TfiI	GAWTC	4 cut(s)	121, 212, 362, 416
Tru1I	TTAA	2 cut(s)	14, 192
Tru9I	TTAA	2 cut(s)	14, 192
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	74, 407
Tsp45I	GTSAC	2 cut(s)	74, 407
TspDTI	ATGAA	2 cut(s)	36, 281
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	2 cut(s)	170, 312
XspI	CTAG	2 cut(s)	401, 444
Zsp2I	ATGCAT	2 cut(s)	393, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.