Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22124770 .. 22125576

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACACTTGCCAAAGCTTATGTTATTATTGCCAAAGAGCACAATAACCTTCATCTTGCTTGGGAGCTTAGTTCAAAGATCCGAAGTTGCCAGCTTTTGCTGTCAACAGCTGCCATGAGGGGGGAGCCTGTGACACTAGAGGAAGCAGAGCCAATAATTAAAAGCCTATCATACCTGATATTCAGAGCCGAAGATGCACATTATGACATTGCAACCACAATAATGACAATGAAATCCCATATCCAAGCCCTTGAACAGCGTGCAAATGCCGCAACAGTTCAAAGCACAGTATTCGGGCAACTAGCTGCTGAAGCATTACCCAAAAGCCTCCATTGCCTAAATGTTAAGCTGACAGCTGATTGGCTTAAAAAGCCATCTCTGCAACGACTTGCAGATGAGAAGAGGAATTCTCCCATACTGGTGGACAACAATACCTACCATTTCTGCATATTTTCAGACAATGTGGTTGCCACCTCTGTGGTTGTCAACTCCACTGTCTCCAATGCTGACCATCCAAAACAGCTGGTCTTCCACATTGTCACAAATGGGATCAACTATGGGACAATGCAGGCGTGGTTCCAAAGTAATGATTTCAAAGGGTCCACAATAGAAGTGCAGAATGTTGAGGAATTTTCTTGGTTTAATGCTTCTTATTCTCCTATCATGAAACAGCTCCTTGATGCAGATTCGCGAGACTTTTATTTTGGTGGATATCAAGATATGAATGTTGTGCCAAAGCTGCGGAGCCCTAAGTATCTATCTTTGCTCAATCACCTTCGATTCTACATTCCAGAGATCGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009987 GO:0010191 GO:0010192 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0047262

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

269

Amino Acids

30.3

Weight (kDa)

6.3

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	149 - 266	5.2e-10	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	691
AciI	CCGC	2 cut(s)	270, 742
AclWI	GGATC	3 cut(s)	73, 557, 794
AcsI	RAATTY	2 cut(s)	406, 629
AcuI	CTGAAG	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	75, 254, 281, 595
AleI	CACNNNNGTG	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	502, 687
AlwI	GGATC	3 cut(s)	73, 557, 794
ApeKI	GCWGC	3 cut(s)	110, 305, 739
ApoI	RAATTY	2 cut(s)	406, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	97, 292, 726
BccI	CCATC	2 cut(s)	382, 519
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcoDI	GTCTC	2 cut(s)	502, 687
BfaI	CTAG	2 cut(s)	137, 302
BisI	GCNGC	4 cut(s)	111, 270, 306, 740
BlsI	GCNGC	4 cut(s)	112, 271, 307, 741
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	4 cut(s)	126, 578, 601, 746
BmsI	GCATC	2 cut(s)	184, 670
BpiI	GAAGAC	1 cut(s)	520
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
Bsa29I	ATCGAT	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	2 cut(s)	207, 331
BseCI	ATCGAT	1 cut(s)	798
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMI	GCAATG	2 cut(s)	207, 331
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	97, 292, 726
BsgI	GTGCAG	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	691
BshVI	ATCGAT	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	502, 687
BsmFI	GGGAC	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	42, 749
Bsp143I	GATC	4 cut(s)	78, 549, 795, 799
Bsp68I	TCGCGA	1 cut(s)	691
BspACI	CCGC	2 cut(s)	270, 742
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	691
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	4 cut(s)	126, 578, 601, 746
BspPI	GGATC	3 cut(s)	73, 557, 794
BsrDI	GCAATG	2 cut(s)	207, 331
BsrI	ACTGG	1 cut(s)	423
BssMI	GATC	4 cut(s)	78, 549, 795, 799
Bst4CI	ACNGT	3 cut(s)	277, 289, 496
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	92, 261, 570
BstDEI	CTNAG	2 cut(s)	68, 750
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	691
BstKTI	GATC	4 cut(s)	81, 552, 798, 802
BstMAI	GTCTC	2 cut(s)	502, 687
BstMBI	GATC	4 cut(s)	78, 549, 795, 799
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 269, 311, 333, 370, 379, 739
BstUI	CGCG	1 cut(s)	691
BstV1I	GCAGC	3 cut(s)	97, 292, 726
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	78
BstXI	CCANNNNNNTGG	2 cut(s)	421, 478
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	798
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	492
BtuMI	TCGCGA	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	92, 261, 570
CciI	TCATGA	1 cut(s)	663
Cfr13I	GGNCC	1 cut(s)	600
ClaI	ATCGAT	1 cut(s)	798
CviAII	CATG	2 cut(s)	115, 664
DdeI	CTNAG	2 cut(s)	68, 750
DpnI	GATC	4 cut(s)	80, 551, 797, 801
DpnII	GATC	4 cut(s)	78, 549, 795, 799
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	749
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	713
EcoT38I	GRGCYC	1 cut(s)	749
FaeI	CATG	2 cut(s)	118, 667
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	2 cut(s)	114, 663
Fnu4HI	GCNGC	4 cut(s)	111, 270, 306, 740
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	4 cut(s)	111, 270, 306, 740
FspBI	CTAG	2 cut(s)	137, 302
GluI	GCNGC	4 cut(s)	111, 270, 306, 740
Hin1II	CATG	2 cut(s)	118, 667
HincII	GTYRAC	2 cut(s)	105, 487
HindII	GTYRAC	2 cut(s)	105, 487
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	686, 780
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	4 cut(s)	105, 424, 487, 603
Hpy188I	TCNGA	3 cut(s)	83, 185, 457
Hpy188III	TCNNGA	4 cut(s)	664, 690, 716, 791
Hpy8I	GTNNAC	4 cut(s)	105, 424, 487, 603
HpyAV	CCTTC	2 cut(s)	59, 785
HpyCH4III	ACNGT	3 cut(s)	277, 289, 496
HpyCH4V	TGCA	9 cut(s)	197, 212, 263, 382, 392, 447, 568, 616, 683
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 269, 311, 333, 370, 379, 739
HpyF3I	CTNAG	2 cut(s)	68, 750
Hsp92II	CATG	2 cut(s)	118, 667
Kzo9I	GATC	4 cut(s)	78, 549, 795, 799
LmnI	GCTCC	4 cut(s)	64, 124, 678, 744
LpnPI	CCDG	6 cut(s)	104, 141, 188, 404, 509, 554
Lsp1109I	GCAGC	3 cut(s)	97, 292, 726
LweI	GCATC	2 cut(s)	184, 670
MaeI	CTAG	2 cut(s)	137, 302
MaeIII	GTNAC	2 cut(s)	130, 538
MalI	GATC	4 cut(s)	80, 551, 797, 801
MboI	GATC	4 cut(s)	78, 549, 795, 799
MboII	GAAGA	3 cut(s)	203, 412, 520
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	42, 749
MluCI	AATT	3 cut(s)	156, 406, 629
MnlI	CCTC	6 cut(s)	111, 133, 338, 396, 484, 619
MseI	TTAA	4 cut(s)	159, 345, 366, 642
MslI	CAYNNNNRTG	3 cut(s)	221, 419, 476
MspA1I	CMGCKG	3 cut(s)	110, 356, 523
MvnI	CGCG	1 cut(s)	691
MwoI	GCNNNNNNNGC	7 cut(s)	194, 269, 311, 333, 370, 379, 739
NdeII	GATC	4 cut(s)	78, 549, 795, 799
NlaIII	CATG	2 cut(s)	118, 667
NlaIV	GGNNCC	4 cut(s)	126, 578, 601, 746
NmuCI	GTSAC	2 cut(s)	130, 538
NruI	TCGCGA	1 cut(s)	691
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	686, 780
PkrI	GCNGC	4 cut(s)	112, 271, 307, 741
PspN4I	GGNNCC	4 cut(s)	126, 578, 601, 746
PspPI	GGNCC	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	3 cut(s)	110, 356, 523
RruI	TCGCGA	1 cut(s)	691
RseI	CAYNNNNRTG	3 cut(s)	221, 419, 476
SaqAI	TTAA	4 cut(s)	159, 345, 366, 642
SatI	GCNGC	4 cut(s)	111, 270, 306, 740
Sau3AI	GATC	4 cut(s)	78, 549, 795, 799
Sau96I	GGNCC	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	42, 749
SfaNI	GCATC	2 cut(s)	184, 670
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	3 cut(s)	221, 419, 476
Sse9I	AATT	3 cut(s)	156, 406, 629
SsiI	CCGC	2 cut(s)	270, 742
SspMI	CTAG	2 cut(s)	137, 302
TaaI	ACNGT	3 cut(s)	277, 289, 496
TaqI	TCGA	2 cut(s)	778, 798
TasI	AATT	3 cut(s)	156, 406, 629
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	686, 780
Tru1I	TTAA	4 cut(s)	159, 345, 366, 642
Tru9I	TTAA	4 cut(s)	159, 345, 366, 642
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	2 cut(s)	130, 538
TseI	GCWGC	3 cut(s)	110, 305, 739
Tsp45I	GTSAC	2 cut(s)	130, 538
TspDTI	ATGAA	4 cut(s)	41, 245, 680, 737
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	406, 629
XspI	CTAG	2 cut(s)	137, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.