Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22172772 .. 22173454

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGATTAGTTCGTCAGAGCATCTTTTACAGTACAACGGAGAACAAAATATGATCCGTCGGGCAGTCCCCTTGGCACTTGGTCTCCTTTGCACATCCAATCCAATGGTCAATGTTATGGACACATTAAACCATGATACAGATTCACAAGTAGCAATGGCTGCAGTGATTTCCTTAGGTGTAAATGCACACCAGTCTGATGGCTTTTTGCTATCGCCAACGGCACTTGAAGGAAGCATAAGCATACTGCATGCATGTCTTGATACGGAAGACATCAATATGTTCTCTACTTTCTTAGTTTGGCAATGCAGTCGAGAATGTTTTAGCCAAGCCGTTGATGCTGTTGACCAGGCTGGTCGTCCCAAAACAATCACTGGTTTCCAGAACCACTCAACACCCGTTCTTCTTGCTGCCGGTGATGGGAGCAGAGCTCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

147

Amino Acids

15.71

Weight (kDa)

4.91

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_C	PF18051	115 - 140	1.9e-11	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	161, 410
AsuHPI	GGTGA	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	148, 397
BccI	CCATC	2 cut(s)	194, 413
BceAI	ACGGC	2 cut(s)	237, 317
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	162, 411
BlsI	GCNGC	2 cut(s)	163, 412
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	31, 328
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	193, 379
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	162, 311
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	2 cut(s)	162, 311
BseNI	ACTGG	2 cut(s)	193, 379
BseXI	GCAGC	2 cut(s)	148, 397
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	53, 345
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	53, 345
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	162, 311
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	193, 379
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	252, 433
BstDEI	CTNAG	2 cut(s)	175, 295
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 338, 432
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	254, 258
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	148, 397
BstV2I	GAAGAC	1 cut(s)	276
BstXI	CCANNNNNNTGG	2 cut(s)	106, 200
Bsu36I	CCTNAGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 372
Cac8I	GCNNGC	2 cut(s)	252, 433
Cfr10I	RCCGGY	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	134, 251, 255
CviJI	RGCY	6 cut(s)	161, 204, 327, 332, 353, 431
CviKI_1	RGCY	6 cut(s)	161, 204, 327, 332, 353, 431
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	175, 295
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	137, 254, 258
FaiI	YATR	8 cut(s)	53, 119, 135, 239, 245, 252, 256, 281
FaqI	GGGAC	2 cut(s)	53, 345
FatI	CATG	3 cut(s)	133, 250, 254
Fnu4HI	GCNGC	2 cut(s)	162, 411
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	162, 411
GluI	GCNGC	2 cut(s)	162, 411
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	3 cut(s)	137, 254, 258
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	19, 199
Hpy188III	TCNNGA	3 cut(s)	260, 314, 382
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	93, 164, 188, 250, 254, 309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 338, 432
HpyF3I	CTNAG	2 cut(s)	175, 295
Hsp92II	CATG	3 cut(s)	137, 254, 258
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	7 cut(s)	206, 335, 339, 360, 362, 395, 427
Lsp1109I	GCAGC	2 cut(s)	148, 397
LweI	GCATC	2 cut(s)	31, 328
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	281, 395
MhlI	GDGCHC	1 cut(s)	433
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	161, 338, 432
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	3 cut(s)	137, 254, 258
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	2 cut(s)	254, 258
PaeI	GCATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	163, 412
Psp124BI	GAGCTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	162, 411
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	2 cut(s)	181, 433
SfaNI	GCATC	2 cut(s)	31, 328
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	313
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	2 cut(s)	171, 379
TseI	GCWGC	2 cut(s)	161, 410
TspGWI	ACGGA	3 cut(s)	47, 54, 281
TspRI	CASTG	2 cut(s)	171, 379
XceI	RCATGY	2 cut(s)	254, 258
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.