Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22272805 .. 22273911

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACATTTGTGAATTTCCAGATACAAGTTCTGGCGCTGAATCACGGCGGCCACGTTCTGGTCTGTTGCGGGATCAGGTTCAGCTTGTGAAAAGAAAGGACTGTGATCGATACGAGATTGTCCAAATTCCAGATGTCCTGTCATTTGAGAAAGGTTTCTTCATAGTAATTCGGGCGTGTCAGCTGTTGGCTCAAAAGAATGAGGGGATAATACTAGTTGGAGTGGCAGGCCCCTCTGGAGCTGGTAAAACTGTTTTCACTGATAAAGTGCTCAACTTCATGCCCAGCATTGCTGTTATTACAATGGACAACTACAATGATGCTAGTCGAATCATCGATGGAAACTTTGATGATCCACGCCTGACAGATTATGATGCATTGCTTGAAAACATACACGACTTAAAGGCATGCAATCCTGTTCAGGTTCCAATATATGATTTCAAGACGAGCTCCCGCATAGGGTACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

157

Amino Acids

17.48

Weight (kDa)

5.16

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	73 - 152	5.1e-06	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	3 cut(s)	49, 70, 454
AclWI	GGATC	2 cut(s)	81, 347
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	14, 126
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	59, 459
AgsI	TTSAA	2 cut(s)	386, 442
AhlI	ACTAGT	1 cut(s)	214
AluBI	AGCT	4 cut(s)	85, 184, 242, 450
AluI	AGCT	4 cut(s)	85, 184, 242, 450
Alw21I	GWGCWC	2 cut(s)	273, 452
AlwI	GGATC	2 cut(s)	81, 347
AoxI	GGCC	2 cut(s)	50, 229
ApoI	RAATTY	2 cut(s)	14, 126
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	273, 452
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	62
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	2 cut(s)	215, 324
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	232, 426
BmsI	GCATC	2 cut(s)	310, 364
BpmI	CTGGAG	1 cut(s)	258
Bsa29I	ATCGAT	2 cut(s)	109, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 459
Bse3DI	GCAATG	2 cut(s)	288, 377
BseCI	ATCGAT	2 cut(s)	109, 336
BseLI	CCNNNNNNNGG	2 cut(s)	59, 459
BseMI	GCAATG	2 cut(s)	288, 377
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	2 cut(s)	52, 231
BshVI	ATCGAT	2 cut(s)	109, 336
BsiHKAI	GWGCWC	2 cut(s)	273, 452
BslI	CCNNNNNNNGG	2 cut(s)	59, 459
BsnI	GGCC	2 cut(s)	52, 231
Bsp1286I	GDGCHC	2 cut(s)	273, 452
Bsp143I	GATC	3 cut(s)	73, 106, 352
BspACI	CCGC	3 cut(s)	49, 70, 454
BspANI	GGCC	2 cut(s)	52, 231
BspDI	ATCGAT	2 cut(s)	109, 336
BspLI	GGNNCC	2 cut(s)	232, 426
BspPI	GGATC	2 cut(s)	81, 347
BsrDI	GCAATG	2 cut(s)	288, 377
BssMI	GATC	3 cut(s)	73, 106, 352
Bst4CI	ACNGT	2 cut(s)	104, 253
BstC8I	GCNNGC	2 cut(s)	229, 409
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	3 cut(s)	76, 109, 355
BstMBI	GATC	3 cut(s)	73, 106, 352
BstNSI	RCATGY	1 cut(s)	411
Bsu15I	ATCGAT	2 cut(s)	109, 336
BsuRI	GGCC	2 cut(s)	52, 231
BsuTUI	ATCGAT	2 cut(s)	109, 336
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	229, 409
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	2 cut(s)	109, 336
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	280, 408
CviJI	RGCY	7 cut(s)	52, 85, 184, 191, 231, 242, 450
CviKI_1	RGCY	7 cut(s)	52, 85, 184, 191, 231, 242, 450
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	3 cut(s)	75, 108, 354
DpnII	GATC	3 cut(s)	73, 106, 352
EaeI	YGGCCR	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	2 cut(s)	283, 411
FaiI	YATR	8 cut(s)	164, 281, 372, 392, 409, 433, 435, 458
FatI	CATG	2 cut(s)	279, 407
FauI	CCCGC	2 cut(s)	63, 461
Fnu4HI	GCNGC	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	215, 324
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	52, 231
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	283, 411
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	41, 330
Hpy188III	TCNNGA	4 cut(s)	20, 131, 237, 442
HpyCH4III	ACNGT	2 cut(s)	104, 253
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	377, 411
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	283, 411
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	73, 106, 352
LmnI	GCTCC	2 cut(s)	239, 455
LweI	GCATC	2 cut(s)	310, 364
MaeI	CTAG	2 cut(s)	215, 324
MaeII	ACGT	1 cut(s)	55
MalI	GATC	3 cut(s)	75, 108, 354
MboI	GATC	3 cut(s)	73, 106, 352
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	273, 452
MluCI	AATT	3 cut(s)	14, 126, 168
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	196, 244
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	184
NdeII	GATC	3 cut(s)	73, 106, 352
NlaIII	CATG	2 cut(s)	283, 411
NlaIV	GGNNCC	2 cut(s)	232, 426
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	41, 330
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	232, 426
PspPI	GGNCC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	73, 106, 352
Sau96I	GGNCC	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	273, 452
SetI	ASST	9 cut(s)	58, 81, 87, 157, 186, 244, 426, 452, 470
SfaNI	GCATC	2 cut(s)	310, 364
SpeI	ACTAGT	1 cut(s)	214
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	3 cut(s)	14, 126, 168
SsiI	CCGC	3 cut(s)	49, 70, 454
SspMI	CTAG	2 cut(s)	215, 324
SstI	GAGCTC	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	104, 253
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	109, 328, 336
TasI	AATT	3 cut(s)	14, 126, 168
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	41, 330
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	151, 268
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	14, 126
XceI	RCATGY	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	215, 324
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.